environment.yml 6.7 KB

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  1. name: interneuron_polarity
  2. channels:
  3. - https://repo.continuum.io/pkgs/free
  4. - defaults
  5. - conda-forge
  6. - ostrokach-forge
  7. - pkgw-forge
  8. dependencies:
  9. - at-spi2-atk=2.26.2=h9b4a0fc_1
  10. - at-spi2-core=2.28.0=h9b4a0fc_1
  11. - atk=2.25.90=hf2eb9ee_1001
  12. - atomicwrites=1.3.0=py37_1
  13. - attrs=19.1.0=py37_1
  14. - backcall=0.1.0=py37_0
  15. - binutils_impl_linux-64=2.31.1=h6176602_1
  16. - binutils_linux-64=2.31.1=h6176602_7
  17. - blas=1.0=mkl
  18. - bleach=3.1.0=py37_0
  19. - boost=1.69.0=py37h8619c78_1001
  20. - boost-cpp=1.69.0=h11c811c_1000
  21. - brian2=2.2.2.1=py37hc9558a2_1
  22. - bzip2=1.0.6=h14c3975_5
  23. - ca-certificates=2019.11.28=hecc5488_0
  24. - cairo=1.14.12=h8948797_3
  25. - cairomm=1.12.2=0
  26. - certifi=2019.11.28=py37_0
  27. - cgal=4.13=py37he1b5a44_1
  28. - cgal-cpp=4.13=h4f13b39_1
  29. - cycler=0.10.0=py37_0
  30. - cython=0.29.13=py37he1b5a44_0
  31. - dbus=1.13.6=h746ee38_0
  32. - decorator=4.4.0=py37_1
  33. - defusedxml=0.5.0=py37_1
  34. - entrypoints=0.3=py37_0
  35. - epoxy=1.5.2=h14c3975_1
  36. - expat=2.2.6=he6710b0_0
  37. - fastcache=1.0.2=py37h14c3975_2
  38. - ffmpeg=4.1.3=h167e202_0
  39. - fontconfig=2.13.1=he4413a7_1000
  40. - freetype=2.9.1=h8a8886c_1
  41. - gcc_impl_linux-64=7.3.0=habb00fd_1
  42. - gcc_linux-64=7.3.0=h553295d_7
  43. - gdk-pixbuf=2.36.9=1
  44. - glib=2.56.2=hd408876_0
  45. - glob2=0.6=py37_1
  46. - gmp=6.1.2=h6c8ec71_1
  47. - gmpy2=2.0.8=py37h10f8cd9_2
  48. - gnutls=3.6.5=hd3a4fd2_1002
  49. - gobject-introspection=1.56.1=py37hbc4ca2d_2
  50. - graph-tool=2.28.dev0=py37h0dcec27_0
  51. - graphite2=1.3.13=h23475e2_0
  52. - gsl=2.4=h14c3975_4
  53. - gst-plugins-base=1.14.0=hbbd80ab_1
  54. - gstreamer=1.14.0=hb453b48_1
  55. - gtk3=3.22.30=h2c0c718_1
  56. - gxx_impl_linux-64=7.3.0=hdf63c60_1
  57. - gxx_linux-64=7.3.0=h553295d_7
  58. - harfbuzz=1.8.8=hffaf4a1_0
  59. - icu=58.2=h9c2bf20_1
  60. - intel-openmp=2019.3=199
  61. - ipykernel=5.1.0=py37h39e3cac_0
  62. - ipython=7.4.0=py37h39e3cac_0
  63. - ipython_genutils=0.2.0=py37_0
  64. - ipywidgets=7.4.2=py37_0
  65. - jedi=0.13.3=py37_0
  66. - jinja2=2.10.1=py37_0
  67. - jpeg=9b=h024ee3a_2
  68. - jsonschema=3.0.1=py37_0
  69. - jupyter=1.0.0=py37_7
  70. - jupyter_client=5.2.4=py37_0
  71. - jupyter_console=6.0.0=py37_0
  72. - jupyter_core=4.4.0=py37_0
  73. - jupyterlab=0.33.11=py37_0
  74. - jupyterlab_launcher=0.11.2=py37h28b3542_0
  75. - kiwisolver=1.0.1=py37hf484d3e_0
  76. - lame=3.100=h14c3975_1001
  77. - libcroco=0.6.12=h468c787_1001
  78. - libedit=3.1.20181209=hc058e9b_0
  79. - libffi=3.2.1=hd88cf55_4
  80. - libgcc=7.2.0=h69d50b8_2
  81. - libgcc-ng=8.2.0=hdf63c60_1
  82. - libgfortran-ng=7.3.0=hdf63c60_0
  83. - libiconv=1.15=h516909a_1005
  84. - libpng=1.6.36=hbc83047_0
  85. - librsvg=2.40.19=h84fa2a2_1000
  86. - libsigcpp=2.10.0=hf484d3e_1001
  87. - libsodium=1.0.16=h1bed415_0
  88. - libstdcxx-ng=8.2.0=hdf63c60_1
  89. - libtiff=4.0.10=h2733197_2
  90. - libuuid=2.32.1=h14c3975_1000
  91. - libxcb=1.13=h1bed415_1
  92. - libxml2=2.9.9=he19cac6_0
  93. - markupsafe=1.1.1=py37h7b6447c_0
  94. - matplotlib=3.0.3=py37h5429711_0
  95. - mistune=0.8.4=py37h7b6447c_0
  96. - mkl=2019.3=199
  97. - mkl_fft=1.0.10=py37ha843d7b_0
  98. - mkl_random=1.0.2=py37hd81dba3_0
  99. - more-itertools=7.0.0=py37_0
  100. - mpc=1.1.0=h10f8cd9_1
  101. - mpfr=4.0.1=hdf1c602_3
  102. - mpmath=1.1.0=py37_0
  103. - nbconvert=5.4.1=py37_3
  104. - nbformat=4.4.0=py37_0
  105. - ncurses=6.1=he6710b0_1
  106. - nettle=3.4.1=h1bed415_1002
  107. - nose=1.3.7=py37_2
  108. - notebook=5.7.8=py37_0
  109. - numpy=1.16.2=py37h7e9f1db_0
  110. - numpy-base=1.16.2=py37hde5b4d6_0
  111. - openh264=1.8.0=hdbcaa40_1000
  112. - openssl=1.1.1d=h516909a_0
  113. - pandoc=2.2.3.2=0
  114. - pandocfilters=1.4.2=py37_1
  115. - pango=1.40.14=he752989_2
  116. - parso=0.4.0=py_0
  117. - patsy=0.5.1=py37_0
  118. - pcre=8.43=he6710b0_0
  119. - pexpect=4.7.0=py37_0
  120. - pickleshare=0.7.5=py37_0
  121. - pip=19.0.3=py37_0
  122. - pixman=0.38.0=h7b6447c_0
  123. - pluggy=0.11.0=py_0
  124. - prometheus_client=0.6.0=py37_0
  125. - prompt_toolkit=2.0.9=py37_0
  126. - ptyprocess=0.6.0=py37_0
  127. - py=1.8.0=py37_0
  128. - pycairo=1.18.1=py37h2a1e443_0
  129. - pygments=2.3.1=py37_0
  130. - pygobject=3.28.3=py37h89f6ae1_1001
  131. - pyparsing=2.4.0=py_0
  132. - pyqt=5.9.2=py37h05f1152_2
  133. - pyrsistent=0.14.11=py37h7b6447c_0
  134. - pyscaffold=3.2.1=py_0
  135. - pytest=4.5.0=py37_0
  136. - python=3.7.3=h0371630_0
  137. - python-dateutil=2.8.0=py37_0
  138. - pytz=2019.1=py_0
  139. - pyzmq=18.0.0=py37he6710b0_0
  140. - qt=5.9.7=h5867ecd_1
  141. - qtconsole=4.4.3=py37_0
  142. - readline=7.0=h7b6447c_5
  143. - scipy=1.2.1=py37h7c811a0_0
  144. - seaborn=0.9.0=py37_0
  145. - send2trash=1.5.0=py37_0
  146. - setuptools=41.0.0=py37_0
  147. - sip=4.19.8=py37hf484d3e_0
  148. - six=1.12.0=py37_0
  149. - sparsehash=2.0.3=hf484d3e_1000
  150. - sqlite=3.27.2=h7b6447c_0
  151. - statsmodels=0.9.0=py37h035aef0_0
  152. - sympy=1.4=py37_0
  153. - terminado=0.8.2=py37_0
  154. - testpath=0.4.2=py37_0
  155. - tk=8.6.8=hbc83047_0
  156. - tornado=6.0.2=py37h7b6447c_0
  157. - tqdm=4.42.1=py_0
  158. - traitlets=4.3.2=py37_0
  159. - wcwidth=0.1.7=py37_0
  160. - webencodings=0.5.1=py37_1
  161. - wheel=0.33.1=py37_0
  162. - widgetsnbextension=3.4.2=py37_0
  163. - x264=1!152.20180806=h14c3975_0
  164. - xorg-fixesproto=5.0=h14c3975_1002
  165. - xorg-inputproto=2.3.2=h14c3975_1002
  166. - xorg-kbproto=1.0.7=h14c3975_1002
  167. - xorg-libice=1.0.9=h516909a_1004
  168. - xorg-libsm=1.2.3=h84519dc_1000
  169. - xorg-libx11=1.6.7=h14c3975_1000
  170. - xorg-libxext=1.3.4=h516909a_0
  171. - xorg-libxfixes=5.0.3=h516909a_1004
  172. - xorg-libxi=1.7.9=h516909a_1002
  173. - xorg-libxrender=0.9.10=h516909a_1002
  174. - xorg-libxtst=1.2.3=h14c3975_1002
  175. - xorg-recordproto=1.14.2=h14c3975_1002
  176. - xorg-renderproto=0.11.1=h14c3975_1002
  177. - xorg-xextproto=7.3.0=h14c3975_1002
  178. - xorg-xproto=7.0.31=h14c3975_1007
  179. - xz=5.2.4=h14c3975_4
  180. - zeromq=4.3.1=he6710b0_3
  181. - zlib=1.2.11=h7b6447c_3
  182. - zstd=1.3.7=h0b5b093_0
  183. - pip:
  184. - aiohttp==3.6.2
  185. - allensdk==1.6.0
  186. - argparse==1.4.0
  187. - argschema==1.17.5
  188. - async-timeout==3.0.1
  189. - bayesian-optimization==1.1.0
  190. - brian2modelfitting==0.3
  191. - chardet==3.0.4
  192. - cma==2.7.0
  193. - coverage==5.0.4
  194. - efel==3.0.80
  195. - future==0.18.2
  196. - genty==1.3.2
  197. - glymur==0.8.19
  198. - greenlet==0.4.15
  199. - h5py==2.10.0
  200. - hdmf==1.0.2
  201. - idna==2.9
  202. - imageio==2.8.0
  203. - joblib==0.14.1
  204. - marshmallow==3.0.0rc6
  205. - mock==4.0.2
  206. - multidict==4.7.5
  207. - mypy==0.770
  208. - mypy-extensions==0.4.3
  209. - nest-asyncio==1.2.0
  210. - networkx==2.4
  211. - nevergrad==0.3.0
  212. - noise==1.2.2
  213. - nose-timer==1.0.0
  214. - numexpr==2.7.1
  215. - packaging==20.3
  216. - pandas==0.25.3
  217. - pillow==7.1.1
  218. - psycopg2-binary==2.8.4
  219. - pyaml==20.3.1
  220. - pynrrd==0.4.2
  221. - pynwb==1.0.2
  222. - pypet==0.4.3
  223. - pywavelets==1.1.1
  224. - pyyaml==5.3.1
  225. - requests==2.23.0
  226. - requests-toolbelt==0.9.1
  227. - ruamel-yaml==0.16.10
  228. - ruamel-yaml-clib==0.2.0
  229. - scikit-build==0.10.0
  230. - scikit-image==0.16.2
  231. - scikit-learn==0.22.2.post1
  232. - scikit-optimize==0.7.4
  233. - scoop==0.7.1.1
  234. - simpleitk==1.2.4
  235. - simplejson==3.17.0
  236. - tables==3.5.1
  237. - typed-ast==1.4.1
  238. - typing-extensions==3.7.4.1
  239. - urllib3==1.25.8
  240. - xarray==0.15.1
  241. - yarl==1.4.2
  242. prefix: /home/pfeiffer/Applications/miniconda2/envs/interneuron_polarity