ChrisKlink/NHP-pRF: Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.

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Chris Klink 4c6918ae5b gin commit from chris-mh16		3 years ago
..
ReadMe.txt	4c6918ae5b gin commit from chris-mh16	3 years ago
ck_Load.m	4c6918ae5b gin commit from chris-mh16	3 years ago
ck_Run.m	4c6918ae5b gin commit from chris-mh16	3 years ago

		
				ReadMe.txt
			
		====================================
Workflow EPHYS pRF's
====================================

These pre-fitting scripts are located in the <..>/Analysis_code/Ephys folder

1	Xing provided the preprocessed data

2	ck_Run.m
	- Central script to coordinate data handling
	- Uses:
		
	2a	ck_Load.m
		- Loads data from <..>/Raw_data/EPHYS
			- Data_blackrock/ Data_matlab / Log_pRF / Channelmaps
            [- The raw data ns6 data is not shared because it is too large]
		- Saves in <..>/Preprocessed_data/EPHYS

3	a Copy <..>/Preprocessed_data/EPHYS to LISA <...>/PRF/Data/ephys
	b Prep data further with <..>/Analysis_code/LISA scripts
    c Run fits on LISA 
	d Copy fit results from LISA <...>/PRF/Results/ back to local 
      <..>/Preprocessed_data/EPHYS//

4	Copy the classic RF mapping data to FitResults/EPHYS//classicRF

5	Continue analysis in <..>/Analysis_code/PostFit

datacite.yml
Title	Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.
Authors	Klink,Chris;Netherlands Institute for Neuroscience;ORCID:0000-0002-6784-7842 Chen,Xing;Netherlands Institute for Neuroscience Vanduffel,Wim;KU Leuven;ORCID:0000-0002-9399-343X Roelfsema,Pieter;Netherlands Institute for Neuroscience;ORCID:0000-0002-1625-0034
Description	This data-set contains all data and code for the paper 'Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.'
License	Creative Commons CC0 1.0 Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/)
References	P.C. Klink, X. Chen, W. Vanduffel, & P.R. Roelfsema (2021). Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex. eLife [doi:10.7554/eLife.67304] (IsSupplementTo)
Funding	NWO, Crossover Program 17619 'INTENSE' NWO, STW-Perspectief P15-42 'NESTOR' NWO, VENI 451.13.023 EU FP7, ERC-339490 'Cortic_al_gorithms' EU, Human Brain Project (agreements 720270 and 748 785907, SGA1 and SGA2) Friends Foundation of the Netherlands Institute for Neuroscience
Keywords	Neuroscience Neuroimaging Neurophysiology Non-human primate Population receptive field
Resource Type	Dataset