NHP-pRF/Analysis_code/PostFit/matlab

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Workflow POSTFIT pRF's (matlab)
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These post-fitting scripts are located in the <..>/prfCode/PostFit/matlab folder

1 ck_Batch_Combine_MRI_SliceChunks.m
- Uses ck_Combine_MRI_SliceChunks.m to put chunks back together
- Takes slice chunks from <..>/FitResults/MRI//
- Combine them
- Save volumes in same folder

2 ck_CollectAllFittingResults.m
- ck_GetMRI_pRF.m
- combines results from 2 animals
- Gets data from <..>/FitResults/MRI/ saves data in <..>/FitResults/MRI/Combined
- Adds D99 atlasses
- ck_GetAtlasTable.m gets the atlas info
- ck_GetEphys_pRF.m
- combines results from 2 animals
- Gets and saves data in <..>/FitResults/EPHYS
- Combines MRI and Ephys
- Saves as AllFits.cv1.mat in <..>/FitResults/MULTIMODAL

3 Run ck_BasicProc_AllFits_cv1.m
- Takes data from <..>/FitResults/MultiModal
- Re-structures
- Saves back as tables and structures in <..>/FitResults/MultiModal

4 ck_StatsAndPlots.m
- Long script that creates plots and runs statistics etc
- Uses:
- ck_GetROIidx.m
- get an ROI index back when querying with label
- ck_xmod_stats.m
- Runs the LMM for crossmodal statistics
- ck_xmod_stats_lowfreqlfp.m
- Runs the LMM for crossmodal statistics for pos/neg low freq lfp
- Contains comments on where manuscript figures are generated





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Example pRF-fit electrode/voxel
# Basis of Figure 1E
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1 ck_ExampleVoxel.m
- for MRI

2 ck_ExampleElectrode.m
- for EPHYS