Cerebellum_Sequence_Lu/README.md

The cerebellum promotes sequential foraging strategies and contributes to the directional modulation of hippocampal place cells

Summary

The cerebellum contributes to spatial coding in the hippocampus. When PKC-dependent mechanisms are impaired in cerebellar Purkinje cells, hippocampal place cells indeed lose their spatial selectivity in the dark, when the animal relies mostly on self-motion cues to navigate. This impairment in PKC-dependent cerebellar functions additionally leads to behavioral deficits in using both external and self-motion cues when learning a goal-oriented navigation task. However, it is unclear how cerebellum influences the exploration strategy used by an animal during free foraging in an open environment. Here we recorded hippocampal place cells in mice with impaired PKC-dependent mechanisms (L7-PKCI) and in their littermate controls while they performed a foraging task where they were rewarded for visiting a subset of hidden locations. We found that L7-PKCI and control mice developed different foraging strategies: while control mice repeated reliable spatial sequences to maximize their rewards, L7-PKCI mice persisted to use a random foraging strategy. The sequence-based strategy was associated with more place cells exhibiting theta-phase precession and theta modulation. It was also correlated with a larger fraction of place cells that were modulated concomitantly by movement direction and speed. Finally, in the dark, the modulation of place cells by movement direction was markedly reduced in L7-PKCI mice, demonstrating that PKC-dependent cerebellar functions control how self-motion cues influence not only position but also direction coding in the hippocampus. Thus, the cerebellum contributes to the development of optimal sequential paths during foraging, possibly by controlling how self-motion and theta signals contribute to place cells coding.

This data set includes behavioral tracking data corresponding to several navigational variables such as position, movement direction, speed and reward delivery. For sessions where behavior was combined with hippocampal recordings, it also includes spike times from hippocampal single units and LFP oscillations.

Repository structure

The EarlyTraining folder corresponds to the first seven days of training and only contains behavioral data.

The HPCrecordings folder contains behavioral data and hippocampal recordings performed during later days of training.

For each mouse and each recording day, four .csv files are provided:

• Nav_MXX_date contains the behavioral data sampled at 100 Hz.

• Spk_MXX_date contains the spike times (in seconds) and the clusters IDs.

• Lfp_MXX_date contains the LFP and the phase of the Theta oscillation sampled at 100Hz.

• CellInfo_MXX_date contains information on single units.

Related Publication

• L Zhang, J Fournier, M Fallahnezhad, AL Paradis, C Rochefort, L Rondi-Reig. (2023). Cerebellum promotes sequential foraging strategies and contributes to the directional modulation of hippocampal place cells, iScience.

Licensing

The data contained in this repository are licensed under a Creative Commons Attribution 4.0 International License.