behavior_testing_data/DLC

open_field_without_video

Example DLC output .h5 file with accompanying config.yaml file.

open_field_with_video

Files produce by h.mayorquin@gmail.com on 2024-08-30 to generate complete test data for DLC in neuroconv.

This folder contains the ouput of running the sample data from the DeepLabCut repository notebook in the following link:

https://colab.research.google.com/github/DeepLabCut/DeepLabCut/blob/master/examples/COLAB/COLAB_DEMO_mouse_openfield.ipynb

That goes under the Open Field label example.

The files are the output of running that algorithm as indicated in the notebook plus the config.yaml file that is an input of training of the model and is usually not in the same folder as the output files.

The complete list of files are:

• config.yaml
• m3v1mp4DLC_resnet50_openfieldOct30shuffle1_1000.h5
• m3v1mp4DLC_resnet50_openfieldOct30shuffle1_1000_labeled.mp4
• m3v1mp4DLC_resnet50_openfieldOct30shuffle1_1000_meta.pickle
• m3v1mp4.mp4

The m3v1mp4.mp4 is the original video. The labeled video that goes under the name m3v1mp4DLC_resnet50_openfieldOct30shuffle1_1000_labeled.mp4 was processed with ffmpeg to reduce the size with the following command:

ffmpeg -i m3v1mp4DLC_resnet50_openfieldOct30shuffle1_1000_labeled.mp4 -vcodec libx264 -crf 28 -preset medium output.mp4

SL18csv

The following .csv file was added 11/13/24 courtesy of the Jadhav Lab: SL18_D19_S01_F01_BOX_SLP_20230503_112642.1DLC_resnet50_SubLearnSleepBoxRedLightJun26shuffle1_100000_stubbed.csv