README_EXAMPLE.txt 880 B

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  1. In this folder an example of the automatic segementation program shown.
  2. By running one of the two shell scripts the program starts and segments a
  3. brainslice with the segmentation and template files. There are two diffrent
  4. scripts, one for MacOS and one for Linux. The only difference between the two is
  5. in the nameing of the python instalation. The program only works with python
  6. 3.7+ and the default macOS instalation of python is 2.7. You are able to check
  7. the version of your python instalation by typing 'python --version' in the
  8. command line. If the version installed is python 2.7 the python 3 package is
  9. often installed as 'python3' instead
  10. How to run:
  11. In the commandline type in 'bash runner_example.sh'
  12. The program will run the program with the sample file and output the correct
  13. files in a new directory inside this one named after the file name of the
  14. brainslice.