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@@ -18,7 +18,7 @@ def full_registration(fixed, moving, output='full_trans.nii', transform_pre=''):
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initial_moving_transform_com=1,
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interpolation='BSpline',
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metric_weight=[0.5] * 6,
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- radius_or_number_of_bins=[4,32] * 3,
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+ radius_or_number_of_bins=[4, 32] * 3,
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sampling_strategy=['Regular'] * 3,
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use_histogram_matching=True,
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winsorize_lower_quantile=0.05,
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@@ -37,7 +37,7 @@ def full_registration(fixed, moving, output='full_trans.nii', transform_pre=''):
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# A faster rigid registration
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-def rigid_registration(fixed, moving, output='affine_trans.nii', transform_pre=''):
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+def rigid_registration(fixed, moving, output='rigid_trans.nii', transform_pre=''):
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ants.Registration(
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dimension=2,
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transforms=['Rigid'],
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@@ -47,7 +47,7 @@ def rigid_registration(fixed, moving, output='affine_trans.nii', transform_pre='
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convergence_threshold=[1.e-6],
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number_of_iterations=[[1000, 1000, 1000]],
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shrink_factors=[[32, 16, 8]],
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- initial_moving_transform_com=0,
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+ initial_moving_transform_com=1,
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interpolation='BSpline',
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metric_weight=[1],
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radius_or_number_of_bins=[32],
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