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processpar.log

processpar.log 2.4 KB
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  1. getIncidenceSize_par.py:85: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
    2. 

  2. 

  3. * deprecated from version: 3.0
    4. 

  4. * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
    5. 

  5.   realAraImg = araDataTemplate.get_data()
    6. 

  6. getIncidenceSize_par.py:92: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
    7. 

  7. 

  8. * deprecated from version: 3.0
    9. 

  9. * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
    10. 

  10.   maskImg = maskData.get_data()
    11. 

  11. getIncidenceSize_par.py:99: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
    12. 

  12. 

  13. * deprecated from version: 3.0
    14. 

  14. * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
    15. 

  15.   volumeAnno = np.round(dataAnno.get_data())
    16. 

  16. getIncidenceSize_par.py:101: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
    17. 

  17. 

  18. * deprecated from version: 3.0
    19. 

  19. * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
    20. 

  20.   volumeMR = dataMR.get_data()
    21. 

  21. getIncidenceSize_par.py:137: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).
    22. 

  22. 

  23. * deprecated from version: 3.0
    24. 

  24. * Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
    25. 

  25.   betMaskImg = betMask.get_data()
    26. 

  26. '1' folder will be proccessed...
    27. 

  27. Traceback (most recent call last):
    28. 

  28.   File "getIncidenceSize_par.py", line 257, in <module>
    29. 

  29.     incidenceMap(regMR_list,regInc_list,regANNO_list,araDataTemplate,incidenceMask,thres,outfile,labels)
    30. 

  30.   File "getIncidenceSize_par.py", line 158, in incidenceMap
    31. 

  31.     labMat = np.stack((labMat, regionAffectPercent))
    32. 

  32.   File "<__array_function__ internals>", line 6, in stack
    33. 

  33.   File "/opt/env/lib/python3.7/site-packages/numpy/core/shape_base.py", line 426, in stack
    34. 

  34.     raise ValueError('all input arrays must have the same shape')
    35. 

  35. ValueError: all input arrays must have the same shape
    36.