testdata_AIDA/nifti/conv2nifti_log.txt

2024-02-19 09:24:22,476 - INFO - Converting following datasets: ['/data/Raw/SP_T1_2_3_1_6_20171220_151213', '/data/Raw/SP_V1_1_5_1_2_20171017_111430', '/data/Raw/SP_V1_2_1_1_2_20171017_121652', '/data/Raw/SP_T1_13_1_1_5_20180507_093812', '/data/Raw/SP_V1_1_1_1_2_20171017_081228', '/data/Raw/SP_V1_1_3_1_3_20171017_092326', '/data/Raw/SP_V1_1_4_1_3_20171017_102012']
2024-02-19 09:24:30,204 - INFO - Output nifti conversion of dataset SP_T1_13_1_1_5_20180507_093812:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsT1c13m1_5-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsT1c13m1_5-05-1-3_TurboRARECoronaltemplate-(E5)]
Identified a localizer, the file will not be converted: ScanID:12
Identified a localizer, the file will not be converted: ScanID:15
NifTi file is generated... [SPsT1c13m1_5-16-1-4_GRE_fMRI_128mtx_155_TR1420-(E16)]
Identified a localizer, the file will not be converted: ScanID:19

2024-02-19 09:24:35,156 - INFO - Output nifti conversion of dataset SP_T1_2_3_1_6_20171220_151213:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsT1c2m3_6-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsT1c2m3_6-05-1-3_TurboRARECoronaltemplate-(E5)]
NifTi file is generated... [SPsT1c2m3_6-06-1-4_GRE_fMRI_dynamic-(E6)]
NifTi file is generated... [SPsT1c2m3_6-07-1-6_EPI_DTI_bis-(E7)]

2024-02-19 09:24:39,131 - INFO - Output nifti conversion of dataset SP_V1_1_3_1_3_20171017_092326:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsV1c1m3_3-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:6, RecoID:1
NifTi file is generated... [SPsV1c1m3_3-07-1-5_TurboRARECoronaltemplate-(E7)]
NifTi file is generated... [SPsV1c1m3_3-08-1-4_GRE_fMRIxFPXmAdelay_Claudia-(E8)]
NifTi file is generated... [SPsV1c1m3_3-09-1-GRE_fMRI_dynamic-(E9)]
NifTi file is generated... [SPsV1c1m3_3-10-1-3_EPI_DTI_bis-(E10)]

2024-02-19 09:24:39,439 - INFO - Output nifti conversion of dataset SP_V1_2_1_1_2_20171017_121652:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsV1c2m1_2-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsV1c2m1_2-05-1-5_TurboRARECoronaltemplate-(E5)]
NifTi file is generated... [SPsV1c2m1_2-06-1-4_GRE_fMRIxFPXmAdelay_Claudia-(E6)]
NifTi file is generated... [SPsV1c2m1_2-07-1-GRE_fMRI_dynamic-(E7)]
NifTi file is generated... [SPsV1c2m1_2-08-1-3_EPI_DTI_bis-(E8)]

2024-02-19 09:24:39,446 - INFO - Output nifti conversion of dataset SP_V1_1_5_1_2_20171017_111430:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsV1c1m5_2-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsV1c1m5_2-05-1-5_TurboRARECoronaltemplate-(E5)]
NifTi file is generated... [SPsV1c1m5_2-06-1-4_GRE_fMRIxFPXmAdelay_Claudia-(E6)]
NifTi file is generated... [SPsV1c1m5_2-07-1-GRE_fMRI_dynamic-(E7)]
NifTi file is generated... [SPsV1c1m5_2-08-1-3_EPI_DTI_bis-(E8)]

2024-02-19 09:24:39,557 - INFO - Output nifti conversion of dataset SP_V1_1_1_1_2_20171017_081228:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsV1c1m1_2-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsV1c1m1_2-05-1-5_TurboRARECoronaltemplate-(E5)]
NifTi file is generated... [SPsV1c1m1_2-08-1-GRE_fMRI_dynamic-(E8)]
NifTi file is generated... [SPsV1c1m1_2-09-1-3_EPI_DTI_bis-(E9)]
NifTi file is generated... [SPsV1c1m1_2-10-1-4_GRE_fMRIxFPXmAdelay_Claudia-(E10)]

2024-02-19 09:24:39,616 - INFO - Output nifti conversion of dataset SP_V1_1_4_1_3_20171017_102012:
Identified a localizer, the file will not be converted: ScanID:1
Identified a localizer, the file will not be converted: ScanID:2
NifTi file is generated... [SPsV1c1m4_3-03-1-1_Localizer_multi_slice]
Conversion failed: ScanID:4, RecoID:1
NifTi file is generated... [SPsV1c1m4_3-05-1-5_TurboRARECoronaltemplate-(E5)]
NifTi file is generated... [SPsV1c1m4_3-07-1-4_GRE_fMRIxFPXmAdelay_Claudia-(E7)]
NifTi file is generated... [SPsV1c1m4_3-08-1-GRE_fMRI_dynamic-(E8)]
NifTi file is generated... [SPsV1c1m4_3-09-1-3_EPI_DTI_bis-(E9)]

2024-02-19 09:24:47,813 - INFO - Output bids helper:
Creating JSON syntax template for parsing the BIDS required metadata (BIDS v1.2.2): /data/Raw/dataset.json
[Important notice] The function helps to minimize the BIDS organization but does not guarantee that the dataset always meets the BIDS requirements. Therefore, after converting your data, we recommend validating your dataset using an official BIDS validator.

2024-02-19 09:26:01,201 - INFO - Output bids convert:
Inspect input BIDS datasheet...
Converting SP_T1_13_1_1_5_20180507_093812...
...Done.
Converting SP_T1_2_3_1_6_20171220_151213...
...Done.
Converting SP_V1_1_1_1_2_20171017_081228...
...Done.
Converting SP_V1_1_3_1_3_20171017_092326...
...Done.
Converting SP_V1_1_4_1_3_20171017_102012...
...Done.
Converting SP_V1_1_5_1_2_20171017_111430...
...Done.
Converting SP_V1_2_1_1_2_20171017_121652...
...Done.

2024-02-19 09:26:01,559 - INFO - Creating T2w maps for following datasets:
[]
2024-02-19 09:26:01,561 - INFO - Finished creating T2w maps