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- Notice: '/data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz' has no defined reference (stroke) mask - will proceed without.
- Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt:
- [NiftyReg ALADIN] Command line:
- reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt
- [reg_aladin_sym] Parameters
- [reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- [reg_aladin_sym] 256x256x48 voxels
- [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm
- [reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz
- [reg_aladin_sym] 228x160x264 voxels
- [reg_aladin_sym] 0.05x0.05x0.05 mm
- [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
- [reg_aladin_sym] Percentage of blocks: 50 %
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Current level 1 / 3
- [reg_aladin_sym] reference image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm
- [reg_aladin_sym] floating image size: 57x40x66 voxels 0.2x0.2x0.2 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [16 16 12]
- [reg_aladin_sym] Backward Block number = [15 10 17]
- [reg_aladin_sym] Initial forward transformation matrix::
- 1 0 0 -8.725
- 0 1 0 -11.325
- 0 0 1 -4.575
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 1 0 0 8.725
- 0 1 0 11.325
- 0 0 1 4.575
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 1.02027 -0.0666332 0.0129656 -8.12867
- 0.0624034 1.16177 0.0370105 -14.5273
- 0.00344527 -0.0581555 0.967937 -3.74336
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 0.976801 0.0552635 -0.0151974 8.68604
- -0.0522571 0.856154 -0.0320363 11.8929
- -0.00661653 0.0512427 1.03125 4.55099
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- [reg_aladin_sym] Current level 2 / 3
- [reg_aladin_sym] reference image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm
- [reg_aladin_sym] floating image size: 114x80x132 voxels 0.1x0.1x0.1 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [32 32 12]
- [reg_aladin_sym] Backward Block number = [29 20 33]
- [reg_aladin_sym] Initial forward transformation matrix::
- 1.02027 -0.0666332 0.0129656 -8.12867
- 0.0624034 1.16177 0.0370105 -14.5273
- 0.00344527 -0.0581555 0.967937 -3.74336
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 0.976801 0.0552635 -0.0151974 8.68604
- -0.0522571 0.856154 -0.0320363 11.8929
- -0.00661653 0.0512427 1.03125 4.55099
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 1.01885 -0.0648916 0.00432447 -8.0723
- 0.0631551 1.16784 0.0303983 -14.514
- 0.00830997 -0.032525 0.961775 -3.97423
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 0.978187 0.0541835 -0.00611082 8.65836
- -0.0526328 0.852616 -0.0267116 11.8439
- -0.0102317 0.0283653 1.03889 4.4579
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- [reg_aladin_sym] Current level 3 / 3
- [reg_aladin_sym] reference image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm
- [reg_aladin_sym] floating image size: 228x160x264 voxels 0.05x0.05x0.05 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [64 64 12]
- [reg_aladin_sym] Backward Block number = [57 40 66]
- [reg_aladin_sym] Initial forward transformation matrix::
- 1.01885 -0.0648916 0.00432447 -8.0723
- 0.0631551 1.16784 0.0303983 -14.514
- 0.00830997 -0.032525 0.961775 -3.97423
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 0.978187 0.0541835 -0.00611082 8.65836
- -0.0526328 0.852616 -0.0267116 11.8439
- -0.0102317 0.0283653 1.03889 4.4579
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 1.01825 -0.0644665 0.00625877 -8.07329
- 0.0637333 1.16481 0.0264947 -14.4705
- 0.00866466 -0.0441315 0.962338 -3.85559
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 0.978767 0.0538724 -0.00784881 8.65117
- -0.0532976 0.854677 -0.023184 11.848
- -0.0112567 0.0387093 1.03814 4.47192
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- Registration Performed in 2 min 31 sec
- Have a good day !
- Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixInv.txt:
- [NiftyReg ALADIN] Command line:
- reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixInv.txt
- [reg_aladin_sym] Parameters
- [reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz
- [reg_aladin_sym] 228x160x264 voxels
- [reg_aladin_sym] 0.05x0.05x0.05 mm
- [reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- [reg_aladin_sym] 256x256x48 voxels
- [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm
- [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
- [reg_aladin_sym] Percentage of blocks: 50 %
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Current level 1 / 3
- [reg_aladin_sym] reference image size: 57x40x66 voxels 0.2x0.2x0.2 mm
- [reg_aladin_sym] floating image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [15 10 17]
- [reg_aladin_sym] Backward Block number = [16 16 12]
- [reg_aladin_sym] Initial forward transformation matrix::
- 1 0 0 8.725
- 0 1 0 11.325
- 0 0 1 4.575
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 1 0 0 -8.725
- 0 1 0 -11.325
- 0 0 1 -4.575
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 0.998175 0.0642153 -0.0126479 8.69219
- -0.0722853 0.886431 -0.0352739 11.9979
- -0.000361145 0.0380125 1.0674 4.42801
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 0.996574 -0.0725979 0.00940962 -7.83306
- 0.0811655 1.12061 0.0379942 -14.3187
- -0.00255331 -0.0399322 0.935509 -3.64115
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- [reg_aladin_sym] Current level 2 / 3
- [reg_aladin_sym] reference image size: 114x80x132 voxels 0.1x0.1x0.1 mm
- [reg_aladin_sym] floating image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [29 20 33]
- [reg_aladin_sym] Backward Block number = [32 32 12]
- [reg_aladin_sym] Initial forward transformation matrix::
- 0.998175 0.0642153 -0.0126479 8.69219
- -0.0722853 0.886431 -0.0352739 11.9979
- -0.000361145 0.0380125 1.0674 4.42801
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 0.996574 -0.0725979 0.00940962 -7.83306
- 0.0811655 1.12061 0.0379942 -14.3187
- -0.00255331 -0.0399322 0.935509 -3.64115
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 0.992792 0.0652954 -0.0131411 8.68461
- -0.0682159 0.880668 -0.0248107 11.9763
- -0.00574154 0.0553174 1.0291 4.51954
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 1.00217 -0.0749942 0.0109892 -7.85497
- 0.0776673 1.12797 0.0281863 -14.3108
- 0.00141644 -0.0610505 0.970269 -3.66631
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- [reg_aladin_sym] Current level 3 / 3
- [reg_aladin_sym] reference image size: 228x160x264 voxels 0.05x0.05x0.05 mm
- [reg_aladin_sym] floating image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm
- [reg_aladin_sym] Block size = [4 4 4]
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Forward Block number = [57 40 66]
- [reg_aladin_sym] Backward Block number = [64 64 12]
- [reg_aladin_sym] Initial forward transformation matrix::
- 0.992792 0.0652954 -0.0131411 8.68461
- -0.0682159 0.880668 -0.0248107 11.9763
- -0.00574154 0.0553174 1.0291 4.51954
- 0 0 0 1
- [reg_aladin_sym] Initial backward transformation matrix::
- 1.00217 -0.0749942 0.0109892 -7.85497
- 0.0776673 1.12797 0.0281863 -14.3108
- 0.00141644 -0.0610505 0.970269 -3.66631
- 0 0 0 1
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [reg_aladin_sym] Final forward transformation matrix::
- 0.990297 0.0709386 -0.0137207 8.7035
- -0.0638561 0.88508 -0.0241835 11.973
- -0.0168092 0.0544608 1.03465 4.51573
- 0 0 0 1
- [reg_aladin_sym] Final backward transformation matrix::
- 1.00475 -0.0812334 0.0114255 -7.82387
- 0.0728315 1.12233 0.0271988 -14.1944
- 0.0124899 -0.0603959 0.965268 -3.74447
- 0 0 0 1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- Registration Performed in 2 min 47 sec
- Have a good day !
- Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt:
- [NiftyReg F3D] Command line:
- reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt
- [NiftyReg F3D] OpenMP is used with 8 thread(s)
- [NiftyReg F3D] **************************************************
- [NiftyReg F3D] INPUT PARAMETERS
- [NiftyReg F3D] **************************************************
- [NiftyReg F3D] Reference image:
- [NiftyReg F3D] * name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1
- [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm
- [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
- [NiftyReg F3D] * gaussian smoothing sigma: 0
- [NiftyReg F3D]
- [NiftyReg F3D] Floating image:
- [NiftyReg F3D] * name: /aida/lib/NP_template_sc0.nii.gz
- [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1
- [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm
- [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
- [NiftyReg F3D] * gaussian smoothing sigma: 0
- [NiftyReg F3D]
- [NiftyReg F3D] Warped image padding value: nan
- [NiftyReg F3D]
- [NiftyReg F3D] Level number: 3
- [NiftyReg F3D]
- [NiftyReg F3D] Maximum iteration number per level: 300
- [NiftyReg F3D]
- [NiftyReg F3D] Final spacing in mm: 3 3 3
- [NiftyReg F3D]
- [NiftyReg F3D] The NMI is used as a similarity measure.
- [NiftyReg F3D] Similarity measure term weight: 0.695
- [NiftyReg F3D]
- [NiftyReg F3D] Bending energy penalty term weight: 0.005
- [NiftyReg F3D]
- [NiftyReg F3D] Linear energy penalty term weights: 0 0
- [NiftyReg F3D]
- [NiftyReg F3D] L2 norm of the displacement penalty term weights: 0
- [NiftyReg F3D]
- [NiftyReg F3D] Jacobian-based penalty term weight: 0.3
- [NiftyReg F3D] * Jacobian-based penalty term is approximated
- [NiftyReg F3D] **************************************************
- [NiftyReg F3D] Current level: 1 / 3
- [NiftyReg F3D] Current reference image
- [NiftyReg F3D] * image dimension: 64 x 64 x 48 x 1
- [NiftyReg F3D] * image spacing: 0.273438 x 0.273438 x 0.3 mm
- [NiftyReg F3D] Current floating image
- [NiftyReg F3D] * image dimension: 57 x 40 x 66 x 1
- [NiftyReg F3D] * image spacing: 0.2 x 0.2 x 0.2 mm
- [NiftyReg F3D] Current control point image
- [NiftyReg F3D] * image dimension: 5 x 5 x 5
- [NiftyReg F3D] * image spacing: 12 x 12 x 12 mm
- [NiftyReg F3D] Initial objective function: 0.79093 = (wSIM)0.796535 - (wBE)1.69313e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00560418
- [NiftyReg F3D] [9] Current objective function: 0.792289 = (wSIM)0.797988 - (wBE)7.00e-08 - (wJAC)5.70e-03 [+ 0.3 mm]
- [NiftyReg F3D] [17] Current objective function: 0.792289 = (wSIM)0.797988 - (wBE)7.00e-08 - (wJAC)5.70e-03 [+ 0 mm]
- [NiftyReg F3D] Current registration level done
- [NiftyReg F3D] --------------------------------------------------
- [NiftyReg F3D] **************************************************
- [NiftyReg F3D] Current level: 2 / 3
- [NiftyReg F3D] Current reference image
- [NiftyReg F3D] * image dimension: 128 x 128 x 48 x 1
- [NiftyReg F3D] * image spacing: 0.136719 x 0.136719 x 0.3 mm
- [NiftyReg F3D] Current floating image
- [NiftyReg F3D] * image dimension: 114 x 80 x 132 x 1
- [NiftyReg F3D] * image spacing: 0.1 x 0.1 x 0.1 mm
- [NiftyReg F3D] Current control point image
- [NiftyReg F3D] * image dimension: 6 x 6 x 6
- [NiftyReg F3D] * image spacing: 6 x 6 x 6 mm
- [NiftyReg F3D] Initial objective function: 0.785755 = (wSIM)0.791584 - (wBE)1.35091e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00582904
- [NiftyReg F3D] [9] Current objective function: 0.789594 = (wSIM)0.795334 - (wBE)5.35e-07 - (wJAC)5.74e-03 [+ 0.3 mm]
- [NiftyReg F3D] [17] Current objective function: 0.789594 = (wSIM)0.795334 - (wBE)5.35e-07 - (wJAC)5.74e-03 [+ 0 mm]
- [NiftyReg F3D] Current registration level done
- [NiftyReg F3D] --------------------------------------------------
- [NiftyReg F3D] **************************************************
- [NiftyReg F3D] Current level: 3 / 3
- [NiftyReg F3D] Current reference image
- [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1
- [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm
- [NiftyReg F3D] Current floating image
- [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1
- [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm
- [NiftyReg F3D] Current control point image
- [NiftyReg F3D] * image dimension: 9 x 9 x 8
- [NiftyReg F3D] * image spacing: 3 x 3 x 3 mm
- [NiftyReg F3D] Initial objective function: 0.781696 = (wSIM)0.787467 - (wBE)8.26567e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00577023
- [NiftyReg F3D] [9] Current objective function: 0.784126 = (wSIM)0.789894 - (wBE)6.84e-06 - (wJAC)5.76e-03 [+ 0.3 mm]
- [NiftyReg F3D] [18] Current objective function: 0.785143 = (wSIM)0.790925 - (wBE)3.91e-05 - (wJAC)5.74e-03 [+ 0.15 mm]
- [NiftyReg F3D] [27] Current objective function: 0.78769 = (wSIM)0.7935 - (wBE)6.30e-05 - (wJAC)5.75e-03 [+ 0.2325 mm]
- [NiftyReg F3D] [36] Current objective function: 0.788349 = (wSIM)0.794173 - (wBE)7.69e-05 - (wJAC)5.75e-03 [+ 0.11625 mm]
- [NiftyReg F3D] [45] Current objective function: 0.788719 = (wSIM)0.794545 - (wBE)8.68e-05 - (wJAC)5.74e-03 [+ 0.0621211 mm]
- [NiftyReg F3D] [54] Current objective function: 0.789295 = (wSIM)0.795112 - (wBE)9.55e-05 - (wJAC)5.72e-03 [+ 0.105684 mm]
- [NiftyReg F3D] [63] Current objective function: 0.78969 = (wSIM)0.795479 - (wBE)1.10e-04 - (wJAC)5.68e-03 [+ 0.120215 mm]
- [NiftyReg F3D] [71] Current objective function: 0.790183 = (wSIM)0.795937 - (wBE)1.30e-04 - (wJAC)5.62e-03 [+ 0.120215 mm]
- [NiftyReg F3D] [80] Current objective function: 0.790439 = (wSIM)0.796177 - (wBE)1.67e-04 - (wJAC)5.57e-03 [+ 0.186333 mm]
- [NiftyReg F3D] [89] Current objective function: 0.790596 = (wSIM)0.79636 - (wBE)2.39e-04 - (wJAC)5.53e-03 [+ 0.0931666 mm]
- [NiftyReg F3D] [97] Current objective function: 0.790789 = (wSIM)0.796575 - (wBE)3.10e-04 - (wJAC)5.48e-03 [+ 0.0931666 mm]
- [NiftyReg F3D] [105] Current objective function: 0.791347 = (wSIM)0.79716 - (wBE)4.06e-04 - (wJAC)5.41e-03 [+ 0.0931666 mm]
- [NiftyReg F3D] [113] Current objective function: 0.791417 = (wSIM)0.797318 - (wBE)5.64e-04 - (wJAC)5.34e-03 [+ 0.0931666 mm]
- [NiftyReg F3D] [122] Current objective function: 0.792005 = (wSIM)0.797927 - (wBE)5.75e-04 - (wJAC)5.35e-03 [+ 0.144408 mm]
- [NiftyReg F3D] [130] Current objective function: 0.7921 = (wSIM)0.79802 - (wBE)5.80e-04 - (wJAC)5.34e-03 [+ 0.0361021 mm]
- [NiftyReg F3D] [137] Current objective function: 0.792395 = (wSIM)0.798289 - (wBE)5.82e-04 - (wJAC)5.31e-03 [+ 0.0758143 mm]
- [NiftyReg F3D] [144] Current objective function: 0.792549 = (wSIM)0.798416 - (wBE)5.84e-04 - (wJAC)5.28e-03 [+ 0.0758143 mm]
- [NiftyReg F3D] [152] Current objective function: 0.792815 = (wSIM)0.798657 - (wBE)5.88e-04 - (wJAC)5.25e-03 [+ 0.117512 mm]
- [NiftyReg F3D] [160] Current objective function: 0.79282 = (wSIM)0.798641 - (wBE)5.94e-04 - (wJAC)5.23e-03 [+ 0.0293781 mm]
- [NiftyReg F3D] [167] Current objective function: 0.792956 = (wSIM)0.798771 - (wBE)5.96e-04 - (wJAC)5.22e-03 [+ 0.0616939 mm]
- [NiftyReg F3D] [175] Current objective function: 0.792966 = (wSIM)0.798779 - (wBE)5.99e-04 - (wJAC)5.21e-03 [+ 0.0350884 mm]
- [NiftyReg F3D] [182] Current objective function: 0.793032 = (wSIM)0.798847 - (wBE)6.06e-04 - (wJAC)5.21e-03 [+ 0.0399131 mm]
- [NiftyReg F3D] [188] Current objective function: 0.793064 = (wSIM)0.798874 - (wBE)6.14e-04 - (wJAC)5.20e-03 [+ 0.0399131 mm]
- [NiftyReg F3D] [197] Current objective function: 0.793186 = (wSIM)0.79897 - (wBE)6.24e-04 - (wJAC)5.16e-03 [+ 0.0868359 mm]
- [NiftyReg F3D] [204] Current objective function: 0.793189 = (wSIM)0.79896 - (wBE)6.30e-04 - (wJAC)5.14e-03 [+ 0.0108545 mm]
- [NiftyReg F3D] [211] Current objective function: 0.79324 = (wSIM)0.799022 - (wBE)6.27e-04 - (wJAC)5.15e-03 [+ 0.0260779 mm]
- [NiftyReg F3D] [217] Current objective function: 0.793245 = (wSIM)0.79903 - (wBE)6.27e-04 - (wJAC)5.16e-03 [+ 0.00651948 mm]
- [NiftyReg F3D] [223] Current objective function: 0.793282 = (wSIM)0.79906 - (wBE)6.30e-04 - (wJAC)5.15e-03 [+ 0.0215795 mm]
- [NiftyReg F3D] [230] Current objective function: 0.793329 = (wSIM)0.799096 - (wBE)6.43e-04 - (wJAC)5.12e-03 [+ 0.0453169 mm]
- [NiftyReg F3D] [237] Current objective function: 0.793335 = (wSIM)0.799095 - (wBE)6.70e-04 - (wJAC)5.09e-03 [+ 0.0453169 mm]
- [NiftyReg F3D] [246] Current objective function: 0.793495 = (wSIM)0.799223 - (wBE)7.39e-04 - (wJAC)4.99e-03 [+ 0.149999 mm]
- [NiftyReg F3D] [254] Current objective function: 0.793558 = (wSIM)0.799281 - (wBE)8.28e-04 - (wJAC)4.90e-03 [+ 0.0749994 mm]
- [NiftyReg F3D] [262] Current objective function: 0.79377 = (wSIM)0.79951 - (wBE)9.30e-04 - (wJAC)4.81e-03 [+ 0.0853119 mm]
- [NiftyReg F3D] [269] Current objective function: 0.793845 = (wSIM)0.799604 - (wBE)1.02e-03 - (wJAC)4.74e-03 [+ 0.0426559 mm]
- [NiftyReg F3D] [277] Current objective function: 0.793992 = (wSIM)0.799733 - (wBE)1.03e-03 - (wJAC)4.71e-03 [+ 0.0895775 mm]
- [NiftyReg F3D] [286] Current objective function: 0.794042 = (wSIM)0.799765 - (wBE)1.06e-03 - (wJAC)4.67e-03 [+ 0.0509472 mm]
- [NiftyReg F3D] [294] Current objective function: 0.794213 = (wSIM)0.799948 - (wBE)1.05e-03 - (wJAC)4.68e-03 [+ 0.0649576 mm]
- [NiftyReg F3D] [300] Current objective function: 0.794213 = (wSIM)0.799948 - (wBE)1.05e-03 - (wJAC)4.68e-03 [+ 0 mm]
- [NiftyReg F3D] Current registration level done
- [NiftyReg F3D] --------------------------------------------------
- [NiftyReg F3D] Registration Performed in 5 min 36 sec
- [NiftyReg F3D] Have a good day !
- Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz:
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- Command line:
- reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz
- Parameters
- Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- 256x256x48 voxels, 1 volumes
- 0.0683594x0.0683594x0.3 mm
- Floating image name: /aida/lib/average_template_50.nii.gz
- 228x160x264 voxels, 1 volumes
- 0.05x0.05x0.05 mm
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz
- Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz:
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- Command line:
- reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz
- Parameters
- Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- 256x256x48 voxels, 1 volumes
- 0.0683594x0.0683594x0.3 mm
- Floating image name: /aida/lib/annoVolume.nii.gz
- 228x160x264 voxels, 1 volumes
- 0.05x0.05x0.05 mm
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz
- Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz:
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- Command line:
- reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz
- Parameters
- Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- 256x256x48 voxels, 1 volumes
- 0.0683594x0.0683594x0.3 mm
- Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz
- 228x160x264 voxels, 1 volumes
- 0.05x0.05x0.05 mm
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz
- Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz:
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- Command line:
- reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz
- Parameters
- Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- 256x256x48 voxels, 1 volumes
- 0.0683594x0.0683594x0.3 mm
- Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz
- 228x160x264 voxels, 1 volumes
- 0.05x0.05x0.05 mm
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz
- Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz:
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- Command line:
- reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz
- Parameters
- Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
- 256x256x48 voxels, 1 volumes
- 0.0683594x0.0683594x0.3 mm
- Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz
- 228x160x264 voxels, 1 volumes
- 0.05x0.05x0.05 mm
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz
- Registration completed
|