KinematicAnalysis/README.md

KinematicAnalysis

Supplementary data for bachelor's thesis: "Kinematic Analysis of Sensory Motor Deficit after Experimental Stroke"

Files:

features.csv → file containing results for calculated features for all video files

Codes:

1_feature_calc.ipynb → Data preprocessing feature calculations

2_feature_ML.ipynb → Different machine learning classifiers for classification by features

3_feature_RF.ipynb → Random forest classifier

4_Classifier.ipynb → Neural network classifier for unbiased analysis

PreprocessedData:

*_preprocessed_crop.csv → used for neural network classifier

*_preprocessed_nan_crop.csv → used for feature analysis

RawData:

*.csv → raw data files containing coordinates from DLC pose estimation (19 tracking points)

MOp stroke				MOs stroke				WM stroke				Mop/MOs sham				WM sham
Mouse ID	BL	P3	P28	Mouse ID	BL	P3	P28	Mouse ID	BL	P3	P28	Mouse ID	BL	P3	P28	Mouse ID	BL	P3	P28
PB_T3_3_1	0	4	4	PB_T3_18_1	4	4	0	PB_V1_1_1	4	4	4	PB_T3_3_3	0	4	4	PB_V1_1_2	4	4	4
PB_T3_3_2	0	4	4	PB_T3_18_4	4	4	4	PB_V1_2_2	4	4	4	PB_T3_4_1	0	4	3	PB_V1_1_3	4	4	4
PB_T3_4_2	0	4	4	PB_T3_18_5	4	4	4	PB_V1_2_3	4	4	4	PB_T3_5_1	0	4	5	PB_V1_3_2	4	4	4
PB_T3_4_3	0	4	4	PB_T3_19_1	4	4	4	PB_V1_3_1	4	4	4	PB_T3_7_4	0	3	0	PB_V1_3_4	4	4	4
PB_T3_4_4	0	4	4	PB_T3_20_1	4	4	4	PB_V1_3_3	4	4	4	PB_T3_8_2	0	4	0	PB_V1_4_1	4	4	4
PB_T3_4_5	0	4	4	PB_T3_21_1	4	4	4	PB_V1_5_1	4	4	4	PB_T3_9_2	0	0	0	PB_V1_5_2	4	4	4
PB_T3_5_2	0	4	4	PB_T3_21_3	4	4	4	PB_V1_5_3	4	4	4	PB_T3_10_1	4	4	0	PB_V1_6_1	4	4	4
PB_T3_6_1	0	5	0					PB_V1_5_5	4	4	4	PB_T3_11_1	4	4	0	PB_V1_6_3	4	4	4
PB_T3_7_2	0	4	0					PB_V1_6_2	4	4	4	PB_T3_12_3	4	4	4	PB_V1_7_2	4	4	4
PB_T3_8_1	0	5	0					PB_V1_7_1	4	4	4	PB_T3_13_2	4	4	4	PB_V1_8_1	4	4	4
PB_T3_8_3	0	4	0					PB_V1_8_2	4	4	4	PB_T3_13_3	4	4	4	PB_V1_8_3	4	4	4
PB_T3_8_4	0	4	0									PB_T3_14_2	4	4	4
PB_T3_8_5	0	4	0									PB_T3_14_4	3	4	4
PB_T3_10_2	4	4	0									PB_T3_15_2	4	4	4
PB_T3_10_3	4	4	0									PB_T3_16_1	4	4	4
PB_T3_12_1	3	4	4									PB_T3_17_2	4	4	4
PB_T3_12_4	4	4	4									PB_T3_18_2	4	4	4
PB_T3_13_4	4	4	4									PB_T3_18_3	4	4	0
PB_T3_14_1	4	4	4									PB_T3_19_2	4	4	4
PB_T3_14_3	4	4	4									PB_T3_19_3	4	4	4
PB_T3_15_1	4	4	4									PB_T3_20_2	4	4	4
PB_T3_16_2	4	4	4									PB_T3_21_2	4	4	4
PB_T3_16_3	4	4	4
PB_T3_17_1	4	4	4
PB_T3_17_3	4	4	4
Sum	47	102	68		28	28	24		44	44	44		63	83	64		44	44	44