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@@ -1,3 +1,54 @@
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# KinematicAnalysis
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-Supplementary data for bachelor's thesis: "Kinematic Analysis of Sensory Motor Deficit after Experimental Stroke"
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+Supplementary data for bachelor's thesis: "Kinematic Analysis of Sensory Motor Deficit after Experimental Stroke"
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+
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+## Files:
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+**features.csv** → file containing results for calculated features for all video files
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+
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+### Codes:
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+**1_feature_calc.ipynb** → Data preprocessing feature calculations
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+
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+**2_feature_MLalgos.ipynb** → Different machine learning classifiers for classification by features
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+
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+**3_feature_model_training.ipynb** → Random forest classifier
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+**4_Classifier.ipynb** → Neural network classifier for unbiased analysis
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+### PreprocessedData:
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+***_preprocessed_crop.csv** → used for neural network classifier
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+
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+***_preprocessed_nan_crop.csv** → used for feature analysis
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+### RawData:
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+***.csv** → raw data files containing coordinates from DLC pose estimation (19 tracking points)
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+
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+
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+| MOp stroke | | | | MOs stroke | | | | WM stroke | | | | Mop/MOs sham | | | | WM sham | | | |
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+|------------|----|-----|-----|------------|----|----|-----|-----------|----|----|-----|--------------|----|----|-----|-----------|----|----|-----|
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+| Mouse ID | BL | P3 | P28 | Mouse ID | BL | P3 | P28 | Mouse ID | BL | P3 | P28 | Mouse ID | BL | P3 | P28 | Mouse ID | BL | P3 | P28 |
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+| PB_T3_3_1 | 0 | 4 | 4 | PB_T3_18_1 | 4 | 4 | 0 | PB_V1_1_1 | 4 | 4 | 4 | PB_T3_3_3 | 0 | 4 | 4 | PB_V1_1_2 | 4 | 4 | 4 |
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+| PB_T3_3_2 | 0 | 4 | 4 | PB_T3_18_4 | 4 | 4 | 4 | PB_V1_2_2 | 4 | 4 | 4 | PB_T3_4_1 | 0 | 4 | 3 | PB_V1_1_3 | 4 | 4 | 4 |
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+| PB_T3_4_2 | 0 | 4 | 4 | PB_T3_18_5 | 4 | 4 | 4 | PB_V1_2_3 | 4 | 4 | 4 | PB_T3_5_1 | 0 | 4 | 5 | PB_V1_3_2 | 4 | 4 | 4 |
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+| PB_T3_4_3 | 0 | 4 | 4 | PB_T3_19_1 | 4 | 4 | 4 | PB_V1_3_1 | 4 | 4 | 4 | PB_T3_7_4 | 0 | 3 | 0 | PB_V1_3_4 | 4 | 4 | 4 |
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+| PB_T3_4_4 | 0 | 4 | 4 | PB_T3_20_1 | 4 | 4 | 4 | PB_V1_3_3 | 4 | 4 | 4 | PB_T3_8_2 | 0 | 4 | 0 | PB_V1_4_1 | 4 | 4 | 4 |
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+| PB_T3_4_5 | 0 | 4 | 4 | PB_T3_21_1 | 4 | 4 | 4 | PB_V1_5_1 | 4 | 4 | 4 | PB_T3_9_2 | 0 | 0 | 0 | PB_V1_5_2 | 4 | 4 | 4 |
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+| PB_T3_5_2 | 0 | 4 | 4 | PB_T3_21_3 | 4 | 4 | 4 | PB_V1_5_3 | 4 | 4 | 4 | PB_T3_10_1 | 4 | 4 | 0 | PB_V1_6_1 | 4 | 4 | 4 |
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+| PB_T3_6_1 | 0 | 5 | 0 | | | | | PB_V1_5_5 | 4 | 4 | 4 | PB_T3_11_1 | 4 | 4 | 0 | PB_V1_6_3 | 4 | 4 | 4 |
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+| PB_T3_7_2 | 0 | 4 | 0 | | | | | PB_V1_6_2 | 4 | 4 | 4 | PB_T3_12_3 | 4 | 4 | 4 | PB_V1_7_2 | 4 | 4 | 4 |
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+| PB_T3_8_1 | 0 | 5 | 0 | | | | | PB_V1_7_1 | 4 | 4 | 4 | PB_T3_13_2 | 4 | 4 | 4 | PB_V1_8_1 | 4 | 4 | 4 |
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+| PB_T3_8_3 | 0 | 4 | 0 | | | | | PB_V1_8_2 | 4 | 4 | 4 | PB_T3_13_3 | 4 | 4 | 4 | PB_V1_8_3 | 4 | 4 | 4 |
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+| PB_T3_8_4 | 0 | 4 | 0 | | | | | | | | | PB_T3_14_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_8_5 | 0 | 4 | 0 | | | | | | | | | PB_T3_14_4 | 3 | 4 | 4 | | | | |
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+| PB_T3_10_2 | 4 | 4 | 0 | | | | | | | | | PB_T3_15_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_10_3 | 4 | 4 | 0 | | | | | | | | | PB_T3_16_1 | 4 | 4 | 4 | | | | |
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+| PB_T3_12_1 | 3 | 4 | 4 | | | | | | | | | PB_T3_17_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_12_4 | 4 | 4 | 4 | | | | | | | | | PB_T3_18_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_13_4 | 4 | 4 | 4 | | | | | | | | | PB_T3_18_3 | 4 | 4 | 0 | | | | |
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+| PB_T3_14_1 | 4 | 4 | 4 | | | | | | | | | PB_T3_19_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_14_3 | 4 | 4 | 4 | | | | | | | | | PB_T3_19_3 | 4 | 4 | 4 | | | | |
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+| PB_T3_15_1 | 4 | 4 | 4 | | | | | | | | | PB_T3_20_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_16_2 | 4 | 4 | 4 | | | | | | | | | PB_T3_21_2 | 4 | 4 | 4 | | | | |
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+| PB_T3_16_3 | 4 | 4 | 4 | | | | | | | | | | | | | | | | |
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+| PB_T3_17_1 | 4 | 4 | 4 | | | | | | | | | | | | | | | | |
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+| PB_T3_17_3 | 4 | 4 | 4 | | | | | | | | | | | | | | | | |
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+| Sum | 47 | 102 | 68 | | 28 | 28 | 24 | | 44 | 44 | 44 | | 63 | 83 | 64 | | 44 | 44 | 44 |
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