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2024_Ruthe_SND
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cleand up for clarity

arefks 3 months ago
parent
ca2cbb7a6e
commit
82d9022a7e
73 changed files with 11 additions and 0 deletions
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      input/del/C57BL6_mouse_fiber.nii.gz
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      input/del/fiber_registered.nii.gz
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      output/Tract_Density_Map/CC_Mop_dilated.nii.gz.nii
  4. 0 0
      output/Tract_Density_Map/CC_Mop_ohneDilation.nii.gz.nii
  5. 0 0
      output/Tract_Density_Map/CC_Mos_Mos.nii.gz.nii
  6. 0 0
      output/Tract_Density_Map/CC_SSp_lower_limb.nii.gz.nii
  7. 0 0
      output/Tract_Density_Map/CC_SSp_upper_limb.nii.nii.gz.nii
  8. 0 0
      output/Tract_Density_Map/CST_Links.nii.gz.nii
  9. 0 0
      output/Tract_Density_Map/CST_Rechts.nii.gz.nii
  10. 0 0
      output/Tract_Density_Map/Optic_Tract_links.nii.gz.nii
  11. 0 0
      output/Tract_Density_Map/Optic_Tract_rechts.nii.gz.nii
  12. 0 0
      output/Tract_Density_Map/Thalamocorticale_links.nii.gz.nii
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      output/Tract_Density_Map/Thalamocorticale_rechts.nii.gz.nii
  14. 0 0
      output/Tract_Density_Map_registered/CC_Mop_dilated_registered.nii.gz_registered.nii
  15. 0 0
      output/Tract_Density_Map_registered/CC_Mop_ohneDilation_registered.nii.gz_registered.nii
  16. 0 0
      output/Tract_Density_Map_registered/CC_Mos_Mos_registered.nii.gz_registered.nii
  17. 0 0
      output/Tract_Density_Map_registered/CC_SSp_lower_limb_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/CC_SSp_upper_limb_registered.nii_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/CST_Links_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/CST_Rechts_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/Optic_Tract_links_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/Optic_Tract_rechts_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/Thalamocorticale_links_registered.nii.gz_registered.nii
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      output/Tract_Density_Map_registered/Thalamocorticale_rechts_registered.nii.gz_registered.nii
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      output/Tract_Mask/CC_Mop_dilated.nii
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      output/Tract_Mask/CC_Mop_ohneDilation.tt.nii
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      output/Nifti_Trakte_V2/CC_Mos_Mos.tt.nii
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      output/Nifti_Trakte_V2/CC_SSp_lower_limb.tt.nii
  29. 0 0
      output/Nifti_Trakte_V2/CC_SSp_upper_limb.nii.tt.nii
  30. 0 0
      output/Tract_Mask/CST_Links.nii
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      output/Tract_Mask/CST_Rechts.nii
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      output/Nifti_Trakte_V2/Optic_Tract_links.tt.nii
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      output/Nifti_Trakte_V2/Optic_Tract_rechts.tt.nii
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      output/Tract_Mask/Thalamocorticale_links.nii
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      output/Tract_Mask/Thalamocorticale_rechts.nii
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      output/Tract_Mask_registered/CC_Mop_dilated_registered.nii
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      output/Tract_Mask_registered/CC_Mop_ohneDilation.tt_registered.nii
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      output/Tract_Mask_registered/CC_Mos_Mos.tt_registered.nii
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      output/Tract_Mask_registered/CC_SSp_lower_limb.tt_registered.nii
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      output/Tract_Mask_registered/CC_SSp_upper_limb_registered.nii.tt_registered.nii
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      output/Tract_Mask_registered/CST_Links_registered.nii
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      output/Tract_Mask_registered/CST_Rechts_registered.nii
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      output/Tract_Mask_registered/Optic_Tract_links.tt_registered.nii
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      output/Tract_Mask_registered/Optic_Tract_rechts.tt_registered.nii
  45. 0 0
      output/Tract_Mask_registered/Thalamocorticale_links_registered.nii
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      output/Tract_Mask_registered/Thalamocorticale_rechts_registered.nii
  47. 1 0
      output/del/Nifti_Tract_density_registered/CC_Mop_dilated_registered.nii.gz_registered.nii
  48. 1 0
      output/del/Nifti_Tract_density_registered/CC_Mop_ohneDilation_registered.nii.gz_registered.nii
  49. 1 0
      output/del/Nifti_Tract_density_registered/CC_Mos_Mos_registered.nii.gz_registered.nii
  50. 1 0
      output/del/Nifti_Tract_density_registered/CC_SSp_lower_limb_registered.nii.gz_registered.nii
  51. 1 0
      output/del/Nifti_Tract_density_registered/CC_SSp_upper_limb_registered.nii_registered.nii.gz_registered.nii
  52. 1 0
      output/del/Nifti_Tract_density_registered/CST_Links_registered.nii.gz_registered.nii
  53. 1 0
      output/del/Nifti_Tract_density_registered/CST_Rechts_registered.nii.gz_registered.nii
  54. 1 0
      output/del/Nifti_Tract_density_registered/Optic_Tract_links_registered.nii.gz_registered.nii
  55. 1 0
      output/del/Nifti_Tract_density_registered/Optic_Tract_rechts_registered.nii.gz_registered.nii
  56. 1 0
      output/del/Nifti_Tract_density_registered/Thalamocorticale_links_registered.nii.gz_registered.nii
  57. 1 0
      output/del/Nifti_Tract_density_registered/Thalamocorticale_rechts_registered.nii.gz_registered.nii
  58. 0 0
      output/Nifti_Trakte_V2/CC_Mop_dilated.nii
  59. 0 0
      output/del/Nifti_Trakte/CC_Mop_dilated_denstitymask.nii.gz.nii
  60. 0 0
      output/Nifti_Trakte_V2/CST_Links.nii
  61. 0 0
      output/Nifti_Trakte_V2/CST_Rechts.nii
  62. 0 0
      output/del/Nifti_Trakte/Optic_Tract_Rechts.nii
  63. 0 0
      output/del/Nifti_Trakte/Optic_Tract_links.nii
  64. 0 0
      output/Nifti_Trakte_V2/Thalamocorticale_links.nii
  65. 0 0
      output/Nifti_Trakte_V2/Thalamocorticale_rechts.nii
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      output/del/Nifti_Trakte_registered/CC_Mop_desnitymask_50um.nii.gz
  67. 0 0
      output/del/Nifti_Trakte_registered/CC_Mop_dilated_registered.nii.gz
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      output/del/Nifti_Trakte_registered/CST_Links_registered.nii.gz
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      output/del/Nifti_Trakte_registered/CST_Rechts_registered.nii.gz
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      output/del/Nifti_Trakte_registered/Optic_Tract_Rechts_registered.nii.gz
  71. 0 0
      output/del/Nifti_Trakte_registered/Optic_Tract_links_registered.nii.gz
  72. 0 0
      output/del/Nifti_Trakte_registered/Thalamocorticale_links_registered.nii.gz
  73. 0 0
      output/del/Nifti_Trakte_registered/Thalamocorticale_rechts_registered.nii.gz

input/C57BL6_mouse_fiber.nii.gz → input/del/C57BL6_mouse_fiber.nii.gz
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input/fiber_registered.nii.gz → input/del/fiber_registered.nii.gz
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output/Tract_Density/CC_Mop_dilated.nii.gz.nii → output/Tract_Density_Map/CC_Mop_dilated.nii.gz.nii
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output/Tract_Density/CC_Mop_ohneDilation.nii.gz.nii → output/Tract_Density_Map/CC_Mop_ohneDilation.nii.gz.nii
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output/Tract_Density/CC_Mos_Mos.nii.gz.nii → output/Tract_Density_Map/CC_Mos_Mos.nii.gz.nii
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output/Tract_Density/CC_SSp_lower_limb.nii.gz.nii → output/Tract_Density_Map/CC_SSp_lower_limb.nii.gz.nii
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output/Tract_Density/CC_SSp_upper_limb.nii.nii.gz.nii → output/Tract_Density_Map/CC_SSp_upper_limb.nii.nii.gz.nii
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output/Tract_Density/CST_Links.nii.gz.nii → output/Tract_Density_Map/CST_Links.nii.gz.nii
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output/Tract_Density/CST_Rechts.nii.gz.nii → output/Tract_Density_Map/CST_Rechts.nii.gz.nii
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output/Tract_Density/Optic_Tract_links.nii.gz.nii → output/Tract_Density_Map/Optic_Tract_links.nii.gz.nii
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output/Tract_Density/Optic_Tract_rechts.nii.gz.nii → output/Tract_Density_Map/Optic_Tract_rechts.nii.gz.nii
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output/Tract_Density/Thalamocorticale_links.nii.gz.nii → output/Tract_Density_Map/Thalamocorticale_links.nii.gz.nii
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output/Tract_Density/Thalamocorticale_rechts.nii.gz.nii → output/Tract_Density_Map/Thalamocorticale_rechts.nii.gz.nii
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output/Nifti_Tract_density_registered/CC_Mop_dilated_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CC_Mop_dilated_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CC_Mop_ohneDilation_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CC_Mop_ohneDilation_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CC_Mos_Mos_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CC_Mos_Mos_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CC_SSp_lower_limb_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CC_SSp_lower_limb_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CC_SSp_upper_limb_registered.nii_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CC_SSp_upper_limb_registered.nii_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CST_Links_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CST_Links_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/CST_Rechts_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/CST_Rechts_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/Optic_Tract_links_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/Optic_Tract_links_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/Optic_Tract_rechts_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/Optic_Tract_rechts_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/Thalamocorticale_links_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/Thalamocorticale_links_registered.nii.gz_registered.nii
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output/Nifti_Tract_density_registered/Thalamocorticale_rechts_registered.nii.gz_registered.nii → output/Tract_Density_Map_registered/Thalamocorticale_rechts_registered.nii.gz_registered.nii
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output/Nifti_Trakte/CC_Mop_dilated.nii → output/Tract_Mask/CC_Mop_dilated.nii
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output/Nifti_Trakte_V2/CC_Mop_ohneDilation.tt.nii → output/Tract_Mask/CC_Mop_ohneDilation.tt.nii
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+ 0 - 0
output/Nifti_Trakte_V2/CC_Mos_Mos.tt.nii
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+ 0 - 0
output/Nifti_Trakte_V2/CC_SSp_lower_limb.tt.nii
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+ 0 - 0
output/Nifti_Trakte_V2/CC_SSp_upper_limb.nii.tt.nii
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output/Nifti_Trakte/CST_Links.nii → output/Tract_Mask/CST_Links.nii
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output/Nifti_Trakte/CST_Rechts.nii → output/Tract_Mask/CST_Rechts.nii
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+ 0 - 0
output/Nifti_Trakte_V2/Optic_Tract_links.tt.nii
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+ 0 - 0
output/Nifti_Trakte_V2/Optic_Tract_rechts.tt.nii
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output/Nifti_Trakte/Thalamocorticale_links.nii → output/Tract_Mask/Thalamocorticale_links.nii
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output/Nifti_Trakte/Thalamocorticale_rechts.nii → output/Tract_Mask/Thalamocorticale_rechts.nii
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output/Nifti_Trakte_registered_v2/CC_Mop_dilated_registered.nii → output/Tract_Mask_registered/CC_Mop_dilated_registered.nii
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BIN
output/Tract_Mask_registered/CC_Mop_ohneDilation.tt_registered.nii
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output/Nifti_Trakte_registered_v2/CC_Mos_Mos.tt_registered.nii → output/Tract_Mask_registered/CC_Mos_Mos.tt_registered.nii
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output/Nifti_Trakte_registered_v2/CC_SSp_lower_limb.tt_registered.nii → output/Tract_Mask_registered/CC_SSp_lower_limb.tt_registered.nii
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output/Nifti_Trakte_registered_v2/CC_SSp_upper_limb_registered.nii.tt_registered.nii → output/Tract_Mask_registered/CC_SSp_upper_limb_registered.nii.tt_registered.nii
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output/Nifti_Trakte_registered_v2/CST_Links_registered.nii → output/Tract_Mask_registered/CST_Links_registered.nii
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output/Nifti_Trakte_registered_v2/CST_Rechts_registered.nii → output/Tract_Mask_registered/CST_Rechts_registered.nii
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output/Nifti_Trakte_registered_v2/Optic_Tract_links.tt_registered.nii → output/Tract_Mask_registered/Optic_Tract_links.tt_registered.nii
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output/Nifti_Trakte_registered_v2/Optic_Tract_rechts.tt_registered.nii → output/Tract_Mask_registered/Optic_Tract_rechts.tt_registered.nii
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output/Nifti_Trakte_registered_v2/Thalamocorticale_links_registered.nii → output/Tract_Mask_registered/Thalamocorticale_links_registered.nii
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output/Nifti_Trakte_registered_v2/Thalamocorticale_rechts_registered.nii → output/Tract_Mask_registered/Thalamocorticale_rechts_registered.nii
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+ 1 - 0
output/del/Nifti_Tract_density_registered/CC_Mop_dilated_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/1p/Zw/MD5E-s38523232--7a7613fc6b6edde0d9b43509c53b93b8.nii/MD5E-s38523232--7a7613fc6b6edde0d9b43509c53b93b8.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CC_Mop_ohneDilation_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/6W/zg/MD5E-s38523232--28ab2af10cf53810b355e7397136a31e.nii/MD5E-s38523232--28ab2af10cf53810b355e7397136a31e.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CC_Mos_Mos_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/xP/2X/MD5E-s38523232--4f1acf75fee6ebd59277183f88d09f94.nii/MD5E-s38523232--4f1acf75fee6ebd59277183f88d09f94.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CC_SSp_lower_limb_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Qj/ZF/MD5E-s38523232--0f8ab80fee61fea928144e4ab9bad8b5.nii/MD5E-s38523232--0f8ab80fee61fea928144e4ab9bad8b5.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CC_SSp_upper_limb_registered.nii_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Gf/1j/MD5E-s38523232--4c29ad2b512ed53edfd8911caeeaa9cd.nii/MD5E-s38523232--4c29ad2b512ed53edfd8911caeeaa9cd.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CST_Links_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/4x/P9/MD5E-s38523232--3d8774d6fbb4721cef5565d57512e599.nii/MD5E-s38523232--3d8774d6fbb4721cef5565d57512e599.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/CST_Rechts_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/wW/GQ/MD5E-s38523232--6201e00a193a0252770304c05fc893f6.nii/MD5E-s38523232--6201e00a193a0252770304c05fc893f6.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/Optic_Tract_links_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/Gw/q3/MD5E-s38523232--a2913f569f1d3f00315191a6b3db3df8.nii/MD5E-s38523232--a2913f569f1d3f00315191a6b3db3df8.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/Optic_Tract_rechts_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/qJ/XG/MD5E-s38523232--22b50e9cc8ed71ba5ffd458e11eb9b27.nii/MD5E-s38523232--22b50e9cc8ed71ba5ffd458e11eb9b27.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/Thalamocorticale_links_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/1v/fZ/MD5E-s38523232--bcc38d6d907e35a75364a8d6562437ab.nii/MD5E-s38523232--bcc38d6d907e35a75364a8d6562437ab.nii

+ 1 - 0
output/del/Nifti_Tract_density_registered/Thalamocorticale_rechts_registered.nii.gz_registered.nii
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@@ -0,0 +1 @@
 
+../../../.git/annex/objects/GV/XZ/MD5E-s38523232--bea239c7db88dcbed43f45b9584acc89.nii/MD5E-s38523232--bea239c7db88dcbed43f45b9584acc89.nii

+ 0 - 0
output/Nifti_Trakte_V2/CC_Mop_dilated.nii
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output/Nifti_Trakte/CC_Mop_dilated_denstitymask.nii.gz.nii → output/del/Nifti_Trakte/CC_Mop_dilated_denstitymask.nii.gz.nii
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+ 0 - 0
output/Nifti_Trakte_V2/CST_Links.nii
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+ 0 - 0
output/Nifti_Trakte_V2/CST_Rechts.nii
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output/Nifti_Trakte/Optic_Tract_Rechts.nii → output/del/Nifti_Trakte/Optic_Tract_Rechts.nii
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output/Nifti_Trakte/Optic_Tract_links.nii → output/del/Nifti_Trakte/Optic_Tract_links.nii
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+ 0 - 0
output/Nifti_Trakte_V2/Thalamocorticale_links.nii
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+ 0 - 0
output/Nifti_Trakte_V2/Thalamocorticale_rechts.nii
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output/Nifti_Trakte_registered/CC_Mop_desnitymask_50um.nii.gz → output/del/Nifti_Trakte_registered/CC_Mop_desnitymask_50um.nii.gz
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output/Nifti_Trakte_registered/CC_Mop_dilated_registered.nii.gz → output/del/Nifti_Trakte_registered/CC_Mop_dilated_registered.nii.gz
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output/Nifti_Trakte_registered/CST_Links_registered.nii.gz → output/del/Nifti_Trakte_registered/CST_Links_registered.nii.gz
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output/Nifti_Trakte_registered/CST_Rechts_registered.nii.gz → output/del/Nifti_Trakte_registered/CST_Rechts_registered.nii.gz
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output/Nifti_Trakte_registered/Optic_Tract_Rechts_registered.nii.gz → output/del/Nifti_Trakte_registered/Optic_Tract_Rechts_registered.nii.gz
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output/Nifti_Trakte_registered/Optic_Tract_links_registered.nii.gz → output/del/Nifti_Trakte_registered/Optic_Tract_links_registered.nii.gz
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output/Nifti_Trakte_registered/Thalamocorticale_links_registered.nii.gz → output/del/Nifti_Trakte_registered/Thalamocorticale_links_registered.nii.gz
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output/Nifti_Trakte_registered/Thalamocorticale_rechts_registered.nii.gz → output/del/Nifti_Trakte_registered/Thalamocorticale_rechts_registered.nii.gz
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