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- **C57BL6_mouse folder**: The corresponding atlas folder from DSI Studio. This folder can also be found in the root directory where DSI Studio is installed.
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- **C57BL6_mouse_iso.nii.gz**: This is the iso NIFTI file created by loading the fib file from the C57BL6_mouse folder and saving the iso part of it as a NIFTI file. This file is equivalent to the C57BL6_mouse.ISO.nii.gz file in the C57BL6_mouse folder, which has a higher resolution. However, since the masks were drawn using the C57BL6_mouse.fib.gz file, this was saved separately.
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- **NP_template_sc0.nii.gz**: This is our in-house MRI template, also known as MTPL. Reference link to the paper: [Frontiers in Neuroinformatics](https://www.frontiersin.org/articles/10.3389/fninf.2019.00042/full), and the GitHub repository: [Aswendt-Lab/AIDAmri - SND_Mask_trafu branch](https://github.com/Aswendt-Lab/AIDAmri/blob/SND_Mask_trafu/lib/NP_template_sc0.nii.gz).
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+- **ABtemplate_website.nii.gz**: This was downloaded to be able to overlay it with viral tracing data and compare it with the masks drawn.
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+- **12_wks_coronal_100141780_100um_projection_density.nrrd**: Containes viral tracing projection data. (fits on ABtemplate_website).
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