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I changed all names in the Tract_mask_tt file

lucaruthe 1 month ago
parent
commit
3fdecc7540
28 changed files with 18 additions and 5 deletions
  1. 18 5
      docs/tract_naming_help.txt
  2. 0 0
      output/Tract_Mask_tt/CC_MOp-MOp.tt.gz
  3. 0 0
      output/Tract_Mask_tt/CC_MOp-MOp_cut.tt.gz
  4. 0 0
      output/Tract_Mask_tt/CC_MOp-MOp_dilated.tt.gz
  5. 0 0
      output/Tract_Mask_tt/CC_MOp-MOp_dilated_cut.tt.gz
  6. 0 0
      output/Tract_Mask_tt/CC_MOs-MOs.tt.gz
  7. 0 0
      output/Tract_Mask_tt/CC_MOs-MOs_cut.tt.gz
  8. 0 0
      output/Tract_Mask_tt/CC_SSp_ll-SSp_ll.tt.gz
  9. 0 0
      output/Tract_Mask_tt/CC_SSp_ll-SSp_ll_cut.tt.gz
  10. 0 0
      output/Tract_Mask_tt/CC_SSp_ul-SSp_ul.tt.gz
  11. 0 0
      output/Tract_Mask_tt/CC_SSp_ul-SSp_ul_cut.tt.gz
  12. 0 0
      output/Tract_Mask_tt/CReT_MOp-TRN_contralesional_CCcut.gz
  13. 0 0
      output/Tract_Mask_tt/CReT_MOp-TRN_ipsilesional_CCcut.tt.gz
  14. 0 0
      output/Tract_Mask_tt/CRuT_MOp-RN_contralesional_mirrored.tt.gz
  15. 0 0
      output/Tract_Mask_tt/CRuT_MOp-RN_ipsilesional.tt.gz
  16. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_contralesional_CCasROA.tt.gz
  17. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_contralesional_CCcut.tt.gz
  18. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_contralesional_selfdrawnROA+CCcut.tt.gz
  19. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_CCasROA.tt.gz
  20. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_CCcut.tt.gz
  21. 0 0
      output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_selfdrawnROA+CCcut.tt.gz
  22. 0 0
      output/Tract_Mask_tt/OT_och-lgn_lgncut.gz
  23. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp+SSs_contralesional_END+CCcut.tt.gz
  24. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp+SSs_ipsilesional_END+CCcut.tt.gz
  25. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_contralesional_END+higherstepsize.tt.gz
  26. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_contralesional_ROI+CCcut.tt.gz
  27. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_ipsilesional_END+higherstepsize.tt.gz
  28. 0 0
      output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_ipsilesional_ROI+CCcut.tt.gz

+ 18 - 5
docs/tract_naming_help.txt

@@ -7,18 +7,31 @@ CC_MOs_MOs_cut.tt
 CC_SSp_ll.tt
 CC_SSp_ll_cut.tt
 CC_SSp_ul.tt
-CC_SSp_ul_cut.tt
+CC_SSp_ul_cut.tt
+Corpus Callosum tract masks zwischen jeweils der gleichen rechten und linken Cortex region als ROI: einmal mit beiden dilated MOp als ROI, mit beiden normal-sized Mop als ROI, mit beiden MOs als ROI, mit beiden SSp-ll als ROI und mit SSp-ul als ROI. Für jeden CC noch eine gecuttete Version (gecuttet hinter den jeweiligen ROI).
+
+
 CST_links_CC_cut
 CST_links_CCasROA
 CST_links_ROA_CC_fibers_cut
 CST_rechts_CC_cut
 CST_rechts_CCasROA
-CST_rechts_ROA_CC_fibers_cut
-Optic_tract_final.tt
+CST_rechts_ROA_CC_fibers_cut
+
+
+Optic_tract_final.tt 
+Mit Optic chasm als Seed und LGN rechts und links als ROI
+
+
 Retikulospinal_tract_links
-Retikulospinal_tract_rechts
+Retikulospinal_tract_rechts
+Damit ist der corticoretikular tract gemeint. Dilated MOp als Seed und 
+
 Rubrospinal_tract_links_
-Rubrospinal_tract_rechts
+Rubrospinal_tract_rechts
+Damit ist der corticorubral tract gemeint. Dilated MOp als Seed und red nucleus als 
+
+
 Thalamocorticale_links_SSp_and_SSs_End
 Thalamocorticale_links_SSp_ll_and_ul_ROI.tt
 Thalamocorticale_links_SSp_ul_and_ll_End_0,2.tt

output/Tract_Mask_tt/CC_MOp_normal.tt.gz → output/Tract_Mask_tt/CC_MOp-MOp.tt.gz


output/Tract_Mask_tt/CC_MOp_normal_cut.tt.gz → output/Tract_Mask_tt/CC_MOp-MOp_cut.tt.gz


output/Tract_Mask_tt/CC_MOp(dilated).tt.gz → output/Tract_Mask_tt/CC_MOp-MOp_dilated.tt.gz


output/Tract_Mask_tt/CC_Mop(dilated)_cut.tt.gz → output/Tract_Mask_tt/CC_MOp-MOp_dilated_cut.tt.gz


output/Tract_Mask_tt/CC_Mos.tt.gz → output/Tract_Mask_tt/CC_MOs-MOs.tt.gz


output/Tract_Mask_tt/CC_MOs_cut.tt.gz → output/Tract_Mask_tt/CC_MOs-MOs_cut.tt.gz


output/Tract_Mask_tt/CC_SSp_ll.tt.gz → output/Tract_Mask_tt/CC_SSp_ll-SSp_ll.tt.gz


output/Tract_Mask_tt/CC_SSp_ll_cut.tt.gz → output/Tract_Mask_tt/CC_SSp_ll-SSp_ll_cut.tt.gz


output/Tract_Mask_tt/CC_SSp_ul.tt.gz → output/Tract_Mask_tt/CC_SSp_ul-SSp_ul.tt.gz


output/Tract_Mask_tt/CC_SSp_ul.cut.tt.gz → output/Tract_Mask_tt/CC_SSp_ul-SSp_ul_cut.tt.gz


output/Tract_Mask_tt/Retikulospinal_Tract_links.tt.gz → output/Tract_Mask_tt/CReT_MOp-TRN_contralesional_CCcut.gz


output/Tract_Mask_tt/Retikulospinal_Tract_rechts.tt.gz → output/Tract_Mask_tt/CReT_MOp-TRN_ipsilesional_CCcut.tt.gz


output/Tract_Mask_tt/Rubrospinal_flipped_links.tt.gz → output/Tract_Mask_tt/CRuT_MOp-RN_contralesional_mirrored.tt.gz


output/Tract_Mask_tt/Rubrospinal_rechts.tt.gz → output/Tract_Mask_tt/CRuT_MOp-RN_ipsilesional.tt.gz


output/Tract_Mask_tt/CST_links_CCasROA.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_contralesional_CCasROA.tt.gz


output/Tract_Mask_tt/CST_links_CC_cut.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_contralesional_CCcut.tt.gz


output/Tract_Mask_tt/CST_links_drawnROA_CC_cut.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_contralesional_selfdrawnROA+CCcut.tt.gz


output/Tract_Mask_tt/CST_rechts_CCasROA.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_CCasROA.tt.gz


output/Tract_Mask_tt/CST_rechts_CC_cut.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_CCcut.tt.gz


output/Tract_Mask_tt/CST_rechts_drawnROA_CC_cut.tt.gz → output/Tract_Mask_tt/CST_MOp-int-py_ipsilesional_selfdrawnROA+CCcut.tt.gz


output/Tract_Mask_tt/Optic_Tract.gz.tt.gz → output/Tract_Mask_tt/OT_och-lgn_lgncut.gz


output/Tract_Mask_tt/Thalamocorticale_links_SSp_and_SSs_End.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp+SSs_contralesional_END+CCcut.tt.gz


output/Tract_Mask_tt/Thalamocorticale_rechts_SSp_and_SSs_End.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp+SSs_ipsilesional_END+CCcut.tt.gz


output/Tract_Mask_tt/Thalamocorticale_links_SSp_ul_and_ll_End.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_contralesional_END+higherstepsize.tt.gz


output/Tract_Mask_tt/Thalamocorticale_links_SSp_ll_and_ul_ROI.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_contralesional_ROI+CCcut.tt.gz


output/Tract_Mask_tt/Thalamocorticale_rechts_SSp_ul_and_ll_End.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_ipsilesional_END+higherstepsize.tt.gz


output/Tract_Mask_tt/Thalamocorticale_rechts_SSp_ll_and_ul_ROI.tt.gz → output/Tract_Mask_tt/TC_DORsm-SSp_ll+SSp_ul_ipsilesional_ROI+CCcut.tt.gz