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@@ -22,7 +22,7 @@ sInfos=getSubjectInfos(sName)
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├─── dateTime % string indicating the date and time of recording;
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├─── V1Contacts % structure containing information about V1 recording contacts;
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│ ├─── Depths % channel depth priorly aligned to earliest CSD sink (see Methods);
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- │ ├─── Channels % 1:16 or 17:32, ID of the channel used by experimenters;
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+ │ ├─── Channels % 1:16 or 17:32, label of the channel on the recording probe;
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│ ├─── ChRejected % channels rejected due to avg. signal energy >20 (see Methods);
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│ ├─── ChSNRLowEq3 % channels with MUAe SNR <= 3 (see Methods);
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│ ├─── Quality % 'OK','BAD', general comment about data quality by visual inspection;
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@@ -33,7 +33,7 @@ sInfos=getSubjectInfos(sName)
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├─── V4Contacts
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│ ├─── Depths % channel depth priorly aligned to earliest CSD sink (see Methods);
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│ ├─── Channels % 1:16 or 17:32, ID of the channel used by experimenters;
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- │ ├─── ChRejected % channels rejected due to avg. signal energy >20 (see Methods);
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+ │ ├─── ChRejected % (very rare) channels rejected due to experimental failure / cortical drift;
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│ ├─── ChSNRLowEq3 % channels with MUAe SNR <= 3 (see Methods);
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│ ├─── Quality % 'OK','BAD', general comment about data quality by visual inspection;
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│ ├─── LaminarAlignments % channel depth priorly aligned to earliest CSD sink binned at 0.15 mm;
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@@ -65,65 +65,65 @@ sData=getSubjectData(sName,sVisualArea,sPenNumber,sDataType,sSelectedTimeWins)
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│ % sVisualArea % {'V1', 'V4'} *REQUIRED FIELD
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│ % sPenNumber % {double, 'GOOD', 'ALL'} 'ALL' is default
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│ % sDataType % {'LFPs', 'MUAEs', 'ALL'} 'LFPs' is default ('MUAEs' is deprecated)
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-│ % sSelectedTimeWins % {'PreStim','PostStim','Stationary','PostCue','PeFirstDim','PreSecondDim','PreThirdDim','ALL'} MUTUALLY EXCLUSIVE, ALL is default
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+│ % sSelectedTimeWins % {'PreStim','PostStim','Stationary','PostCue','PeFirstDim','PreSecondDim','PreThirdDim','ALL'} MUTUALLY EXCLUSIVE, 'ALL' is default
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│
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├─── subjectName % the subject name;
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├─── penIDs % the ID of the sessions analysed;
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├─── penInfos % a session-by-session data structure with session infos (see getSubjectInfos());
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└─── LfpStruct % a session-by-session data structure with LFP data;
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│
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- ├─── Sorted % string indicating the date and time of recording;
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- │ ├─── Labels % channel depth priorly aligned to earliest CSD sink (see Methods);
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- │ │ ├─── Dimming
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- │ │ ├─── Outcome
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- │ │ ├─── GratCondition
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- │ │ ├─── selectedNlxEvents
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- │ │ ├─── SupraChsLamAlignsBi
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- │ │ ├─── GranrChsLamAlignsBi
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- │ │ └─── InfraChsLamAlignsBi
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+ ├─── Sorted % string with date and time of recording;
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+ │ ├─── Labels % task-related metadata information;
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+ │ │ ├─── Dimming % 1:3 stimulus at first, second or third dimming is attended;
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+ │ │ ├─── Outcome % trial-by-trial behavioral outcome (0=successful/rewarded);
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+ │ │ ├─── GratCondition % 1:36 unique task-related configuration (stimuli color x stimuli order x dimming order)
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+ │ │ ├─── selectedNlxEvents % (deprecated) Neuralynx ID of events selected;
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+ │ │ ├─── SupraChsLamAlignsBi % Channel index of selected Supra laminar alignments
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+ │ │ ├─── GranrChsLamAlignsBi % Channel index of selected Granr laminar alignments
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+ │ │ └─── InfraChsLamAlignsBi % Channel index of selected Infra laminar alignments
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│ │
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- │ ├─── Delays %
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- │ │ ├─── Stationary %
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- │ │ ├─── CueOnset %
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- │ │ ├─── FirstDim %
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- │ │ ├─── SecondDim %
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- │ │ └─── ThirdDim %
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+ │ ├─── Delays % trial-by-trial dimming delays;
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+ │ │ ├─── Stationary % stationary time window delay;
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+ │ │ ├─── CueOnset % cue onset pseudo-random delay;
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+ │ │ ├─── FirstDim % first dim pseudo-random delay;
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+ │ │ ├─── SecondDim % second dim pseudo-random delay;
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+ │ │ └─── ThirdDim % third dim pseudo-random delay;
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│ │
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│ ├─── Full.Supra
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│ │ ├─── RF
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- │ │ │ ├─── PreStimDataBi
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- │ │ │ ├─── PostStimDataBi
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- │ │ │ ├─── PostStimDataBiZSc
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- │ │ │ ├─── StationaryDataBi
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- │ │ │ ├─── StationaryDataBiZSc
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- │ │ │ ├─── PostCueDataBi
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- │ │ │ ├─── PostCueDataBiZSc
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- │ │ │ ├─── PreFirstDimDataBi
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- │ │ │ ├─── PreFirstDimDataBiZSc
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- │ │ │ ├─── PreSecondDimDataBi
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- │ │ │ ├─── PreSecondDimDataBiZSc
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- │ │ │ ├─── PreThirdDimDataBi
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- │ │ │ ├─── PreThirdDimDataBiZSc
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- │ │ │ ├─── gratCondFirstDim
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- │ │ │ ├─── gratCondSecondDim
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- │ │ │ └─── gratCondThirdDim
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+ │ │ │ ├─── PreStimDataBi % (chs x trials x 1024 timepoints) Pre-stimulus (approx. -1000, 0 ms before stimulus onset) LFP data bipolar derived
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+ │ │ │ ├─── PostStimDataBi % (chs x trials x 1024 timepoints) Post-stimulus (approx. 0, 1000 ms after stimulus onset) LFP data bipolar derived
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+ │ │ │ ├─── PostStimDataBiZSc % (chs x trials x 1024 timepoints) Post-stimulus (approx. 0, 1000 ms after stimulus onset) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── StationaryDataBi % (chs x trials x 1024 timepoints) Stationary (approx. 200, 1200 ms after stimulus onset) LFP data bipolar derived
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+ │ │ │ ├─── StationaryDataBiZSc % (chs x trials x 1024 timepoints) Post-stimulus (approx. 200, 1200 ms after stimulus onset) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── PostCueDataBi % (chs x trials x 1024 timepoints) Post-cue (approx. 0, 1000 ms after cue onset) LFP data bipolar derived
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+ │ │ │ ├─── PostCueDataBiZSc % (chs x trials x 1024 timepoints) Post-cue (approx. 0, 1000 ms after cue onset) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── PreFirstDimDataBi % (chs x trials x 1024 timepoints) Pre-firstdim (approx. -1000, 0 ms) LFP data bipolar derived
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+ │ │ │ ├─── PreFirstDimDataBiZSc % (chs x trials x 1024 timepoints) Pre-firstdim (approx. -1000, 0 ms) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── PreSecondDimDataBi % (chs x trials x 1024 timepoints) Pre-seconddim (approx. -1000, 0 ms) LFP data bipolar derived
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+ │ │ │ ├─── PreSecondDimDataBiZSc % (chs x trials x 1024 timepoints) Pre-seconddim (approx. -1000, 0 ms) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── PreThirdDimDataBi % (chs x trials x 1024 timepoints) Pre-thirddim (approx. -1000, 0 ms) LFP data bipolar derived
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+ │ │ │ ├─── PreThirdDimDataBiZSc % (chs x trials x 1024 timepoints) Pre-thirddim (approx. -1000, 0 ms) LFP data bipolar derived and Z-scored to Prestim (0 mean, 1 std)
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+ │ │ │ ├─── gratCondFirstDim % trial-by-trial first dimming RF task configuration
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+ │ │ │ ├─── gratCondSecondDim % trial-by-trial second dimming RF task configuration
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+ │ │ │ └─── gratCondThirdDim % trial-by-trial third dimming RF task configuration
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│ │ │
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│ │ ├─── OUT1
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- │ │ │ ├─── PreStimDataBi
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+ │ │ │ ├─── PreStimDataBi % (chs x trials x 1024 timepoints) Pre-stimulus (approx. -1000, 0 ms before stimulus onset) LFP data bipolar derived
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│ │ │ ├─── ...
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- │ │ │ └─── gratCondThirdDim
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+ │ │ │ └─── gratCondThirdDim % trial-by-trial third dimming OUT1 task configuration
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│ │ │
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│ │ └─── OUT2
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- │ │ ├─── PreStimDataBi
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+ │ │ ├─── PreStimDataBi % (chs x trials x 1024 timepoints) Pre-stimulus (approx. -1000, 0 ms before stimulus onset) LFP data bipolar derived
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│ │ ├─── ...
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- │ │ └─── gratCondThirdDim
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+ │ │ └─── gratCondThirdDim % trial-by-trial third dimming OUT2 task configuration
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│ │
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- │ ├─── Full.Granr
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- │ │ ├─── RF
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+ │ ├─── Full.Granr % (see Full.Supra)
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+ │ │ ├─── RF
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│ │ ├─── ...
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│ │ └─── OUT2
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│ │
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- │ └─── Full.Infra
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+ │ └─── Full.Infra % (see Full.Supra)
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│ ├─── RF
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│ ├─── ...
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│ └─── OUT2
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