Looking-to-cue-sides-and-modulation-of-value-in-OFC/code/readme_code.md

Code organization

1. Load Subject Data from stored files (in data folder, make sure to clone the repository folders as they are)

    subj1Data=getSubjectData(1);
    subj2Data=getSubjectData(2);
   

2. Access behavioral and experimental variables

    subj1bi=getBehavioralInfos(subj1Data);
    subj2bi=getBehavioralInfos(subj2Data);
   

3. Access eye data between time epochs for given session

    'preoffer1','offer1','delay1','offer2','delay2',
    'startfix','choicego','choicesacc','choicemade'.
   

   e.g. Subject1, Session 1, 'offer1' to 'delay1'

   subj1et=getEyeTracks(subj1Data,1,'offer1','delay1');
   

4. Access neural data between time epochs for given session e.g. Subject1, session1,

   subj1ss=getSpikeSequences(subj1Data,1,'offer1','delay1');
   

5. Access behavioral data pooled in both subjects, all sessions

   subjsData(1).sbdata=subj1Data;
   subjsData(2).sbdata=subj2Data;
   poolstackvars=getPoolStackVars(subjsData);
   

6. Access eye data pooled in both subjects (sessions x task epochs)

   subjsData(1).sbdata=subj1Data;
   subjsData(2).sbdata=subj2Data;
   poolstackepos=getPoolStackEyePos(subjsData);
   

7. Access neural data pooled in both subjects (sessions x task epochs)

    subjsData(1).sbdata=subj1Data
    subjsData(2).sbdata=subj2Data;
    poolstackspks=getPoolStackSpks(subjsData);
   

8. Access eye and neural data pooled in both subjects, sessions (x task epochs)

    pooltweyepos=getTimewinsPoolEyePos();
    pooltwspksq=getTimewinsPoolSpikeSeqs();
   

9. Run analyses in Fig.1-2 through behavioralAnalysis.m

10. Run analyses in Fig.3 through neuralAnalysis.m,

11. Run analyses in Fig.4 through neuralAnalysisDelayShiftAligned.m

    (related, optional: run analyses in Fig. S15 through neuralAnalysisOfferShiftAligned.m)

12. Run analyses in Fig.5A-D through neuralAnalysisChoice.m,

13. Run analyses in in Fig.5E-F through neuralAnalysisChoiceResiduals.m.

14. All supplementary tables are obtained by storing results in 9-13.

15. All supplementary figures can be obtained by minor edits to computational parameter values in 9-13.

In case of further interest, please contact corresponding author name.surname@upf.edu

Demetrio Ferro

Creative Commons BY-NC-SA 4.0 - May 2024