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4 tháng trước cách đây | |
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.. | ||
support_functions | 4 tháng trước cách đây | |
behavioralAnalyses.m | 1 năm trước cách đây | |
neuralAnalyses.m | 1 năm trước cách đây | |
neuralAnalysesChoice.m | 9 tháng trước cách đây | |
neuralAnalysesChoiceResiduals.m | 4 tháng trước cách đây | |
neuralAnalysesDelayShiftAligned.m | 4 tháng trước cách đây | |
neuralAnalysesOfferShiftAligned.m | 4 tháng trước cách đây | |
readme_code.md | 4 tháng trước cách đây |
Code organization
Load Subject Data from stored files (in data folder, make sure to clone the repository folders as they are)
subj1Data=getSubjectData(1);
subj2Data=getSubjectData(2);
Access behavioral and experimental variables
subj1bi=getBehavioralInfos(subj1Data);
subj2bi=getBehavioralInfos(subj2Data);
Access eye data between time epochs for given session
'preoffer1','offer1','delay1','offer2','delay2',
'startfix','choicego','choicesacc','choicemade'.
e.g. Subject1, Session 1, 'offer1' to 'delay1'
subj1et=getEyeTracks(subj1Data,1,'offer1','delay1');
Access neural data between time epochs for given session e.g. Subject1, session1,
subj1ss=getSpikeSequences(subj1Data,1,'offer1','delay1');
Access behavioral data pooled in both subjects, all sessions
subjsData(1).sbdata=subj1Data;
subjsData(2).sbdata=subj2Data;
poolstackvars=getPoolStackVars(subjsData);
Access eye data pooled in both subjects (sessions x task epochs)
subjsData(1).sbdata=subj1Data;
subjsData(2).sbdata=subj2Data;
poolstackepos=getPoolStackEyePos(subjsData);
Access neural data pooled in both subjects (sessions x task epochs)
subjsData(1).sbdata=subj1Data
subjsData(2).sbdata=subj2Data;
poolstackspks=getPoolStackSpks(subjsData);
Access eye and neural data pooled in both subjects, sessions (x task epochs)
pooltweyepos=getTimewinsPoolEyePos();
pooltwspksq=getTimewinsPoolSpikeSeqs();
Run analyses in Fig.1-2 through behavioralAnalysis.m
Run analyses in Fig.3 through neuralAnalysis.m
,
Run analyses in Fig.4 through neuralAnalysisDelayShiftAligned.m
(related, optional: run analyses in Fig. S15 through neuralAnalysisOfferShiftAligned.m
)
Run analyses in Fig.5A-D through neuralAnalysisChoice.m
,
Run analyses in in Fig.5E-F through neuralAnalysisChoiceResiduals.m
.
In case of further interest, please contact corresponding author name.surname@upf.edu
Demetrio Ferro
Creative Commons BY-NC-SA 4.0 - May 2024
datacite.yml | |
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Title | Gaze-centered gating and reactivation of value encoding in orbitofrontal cortex |
Authors |
Ferro,Demetrio;Center for Brain and Cognition, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona (Spain), 08003;;ORCID:0000-0003-4969-1415
Hayden,Benjamin;Department of Neurosurgery, Baylor College of Medicine, Houston, TX (USA), 77030;ORCID:0000-0002-7678-4281 Moreno Bote,Rubén;Center for Brain and Cognition, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona (Spain), 08003;;ORCID:0000-0003-0398-014X |
Description | The resource contains simultaneous eye tracks and neural orbitofrontal cortex (OFC) for behavioral tasks performed by two adult macaques (Macaca Mulatta). The analyses allowed to access the structure of a decision-making task where OFC neural activity is modulated by gaze direction. |
License | Creative Commons Attribution-NonCommercial-ShareAlike-4.0 International (https://creativecommons.org/licenses/by-nc-sa/4.0/) |
References |
Ferro, D., Cash-Padgett, T., Zhe-Wang, M., Hayden, B.Y. and Moreno-Bote, R., 2023. Gaze-centered gating and reactivation of value encoding in orbitofrontal cortex. bioRxiv. [doi:10.1101/2023.04.20.537677] (IsSupplementTo)
Ferro, Anna Rifé Mata, A., Cash-Padgett, T., Zhe-Wang, M., Hayden, B.Y. and Moreno-Bote, R., 2023. The role of gaze for value encoding and recollection in orbitofrontal cortex. CCN 2023. [url:https://2023.ccneuro.org/view_paper8951.html?PaperNum=1122] (IsSupplementTo) Ferro, D., Hayden, B.Y., and Moreno-Bote, R., 2023. Model of gaze centred activation and reactivation of value encoding in orbitofrontal cortex. Ebrains Knowdedgegraph. [url:https://search.kg.ebrains.eu/instances/a2dce812-1d4b-4fc5-a69f-96005288c12e] (IsSupplementTo) Strait, C.E., Blanchard, T.C. and Hayden, B.Y., 2014. Reward value comparison via mutual inhibition in ventromedial prefrontal cortex. Neuron, 82(6), pp.1357-1366. [doi:10.1016/j.neuron.2014.04.032] (IsSupplementTo) |
Funding |
HHMI (55008742) [R.M.B.]
Fundação Bial (106/2022) [R.M.B.] Ministerio de Ciencia e Innovacion de España (PID2020-114196GB-I00/AEI) [R.M.B.] ICREA Academia (2022) [R.M.B.] |
Keywords |
Neuroscience
Decision making Orbitofrontal cortex |
Resource Type |
Dataset |