Demetrio Ferro
bc692c0f24
Update 'Code/CSD/get_CSD.ipynb'
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2 ماه پیش | |
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| .. | ||
| CSD | 2 ماه پیش | |
| ccf_volumes | 3 ماه پیش | |
| LFP_functions.py | 3 ماه پیش | |
| README.md | 3 ماه پیش | |
| Spectral_Analysis.ipynb | 3 ماه پیش | |
| Stim_to_LFP.ipynb | 3 ماه پیش | |
| get_cortical_layers.ipynb | 3 ماه پیش | |
| get_power_spectra.ipynb | 3 ماه پیش | |
The following files contain the code used for CSD estimation from the LFPs from Allen Brain Observatory and the task engagement prediction using Linear Discriminant Analysis.
This notebook contains the first steps for Allen data obtention. It saves the desired sessions and the LFPs, and aligns them to the novel stimuli presentations.
This notebook upgrades the channel dataframes from the previous notebook by adding the labels on Cortical Layers using the Common Coordinates Framework from Allen Brain Map.
This notebook computes the Current Source Densities for all the LFP data
The same as get_CSD.ipynb but for the obtention of Power Spectra
This notebook performs the data discretization and prepares it for task engagement prediction with LDA
The same as get_CSD.ipynb but from Power Spectra
This script contains several functions used in the notebooks (LFP data alignment, Energy Normalization, CSD estimation, etc.)
| datacite.yml | |
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| Title | Layer and frequency-specific task engagement in primary visual cortex |
| Authors |
Ferro,Demetrio;Center for Brain and Cognition, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona (Spain), 08003;;ORCID:0000-0003-4969-1415
Boncompte Carré,Pau;Center for Brain and Cognition, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona (Spain), 08003 Moreno Bote,Rubén;Center for Brain and Cognition, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona (Spain), 08003;;ORCID:0000-0003-0398-014X |
| Description | This resource contains software for the analysis of local field potential signals recorded in primary visual cortex and publicly availabe by Allen Brain Insitute (Visual Behavior Neuropixels). The data are recorded by using multi-contact laminar probes, hence span through cortical depths, during image change detection task. |
| License | Creative Commons Attribution-NonCommercial-ShareAlike-4.0 International (https://creativecommons.org/licenses/by-nc-sa/4.0/) |
| References |
Morrison, Christopher. Allen Institute - Visual Behavior - Neuropixels. DANDI Archive. [doi:10.48324/DANDI.000713/0.240702.1725] (IsSupplementTo)
Potworowski, J., Jakuczun, W., Łęski, S. & Wójcik, D. (2012) Kernel current source density method. Neural Comput 24(2), 541-575. [doi:10.1162/neco_a_00236] (IsSupplementTo) Pettersen, K. H., Devor, A., Ulbert, I., Dale, A. M. & Einevoll, G. T. (2006) Current-source density estimation based on inversion of electrostatic forward solution: effects of finite extent of neuronal activity and conductivity discontinuities. J Neurosci Methods 154(1-2), 116-133. [doi:10.1016/j.jneumeth.2005.12.005] (IsSupplementTo) |
| Funding | |
| Keywords |
Visual Neuroscience
Task Engagement Laminar Layers |
| Resource Type |
Software |
