future additions: + Add CIVET-NMT average surface ---------------------------------------------------------------------- directory version : 21 (Sarcastic Sardine) date uploaded     : 2020-09-27 updates: + Updated segmentation using the Subcortical Atlas of the Rhesus Macaque (SARM) + Added the SARM v1.0 + Fixed float datatype for a subset of files (converted to short/byte) + Removed hippocampal CHARM regions due to overlap with SARM + Modified CHARM boundaries to lower overlap with SARM + Modified atlas key tables to be tab delimited for easier manipulation + Added CHARM and SARM ROI surfaces + Changed supplemental_* directories to tables_* to prevent duplicate names + Fixed center of mass calculations in CHARM ---------------------------------------------------------------------- directory version : 20 (Inflated Iguana) date uploaded     : 2020-08-03 updates: + Updated segmentation using contributions from Pierce Perkins + Updated segmentation using preliminary SARM atlas + NMT v2 uploaded to AFNI + NMT and CHARM pages generated on AFNI website + @Install_NMT script integrated into AFNI + Removed "_level" from all CHARM atlases for brevity + Added semi-inflated CIVET surfaces + Removed CIVET non-rsl surfaces + Removed CIVET blood vessel surface + Renamed remaining CIVET surfaces + Removed Paxinos atlas in preparation for the SARM + Added readme files ---------------------------------------------------------------------- directory version : 19 (Sassy Sasquatch) date uploaded     : 2020-06-18 updates: + Filled in 0 values inside brainmask + Cropped D99 atlas using brain mask + Refined NMT segmentation using intermediate G12 atlas + CHARM: Renamed V3/V3A to V3d/V3A ---------------------------------------------------------------------- directory version : 18 (Wily Wombat) date uploaded     : 2020-06-09 updates: + Updated the CustomAtlases.niml files for the symmetric and asymmetric templates + Separated symmetric and asymmetric NMT2 templates + Limited modal smoothing on certain delicate structures when generating low-res + Warped D99 to NMT using new skullstriped template + Warped Paxinos to NMT using new skullstriped template + Refined D99 and Paxinos atlases using new warps ---------------------------------------------------------------------- directory version : 17 (Mistaken Marmoset) date uploaded     : 2020-06-04 updates: + Added CHARM label tables back in after they were somehow removed. ---------------------------------------------------------------------- directory version : 16 (Adventurous Alpaca) date uploaded     : 2020-06-02 updates: + Updated ventricle mask based on Paxinos segmentation + Improved segmentation-based refinement of Paxinos atlas + Added fh cortical sheet mask (mistakenly left out) + Added supplemental_Paxinos directory ---------------------------------------------------------------------- directory version : 15 (Boisterous Baracuda) date uploaded     : 2020-06-01 updates: + refined frontal surface of brain masks + limited other masks to new refined brain mask + created new skullstriped template using refined brain mask + Incorporated new segmentation from Pierce Perkins and Adam Messinger + regenerated the CHARM and D99 atlas using refined brain mask + removed duplicate surfaces + Added Calebrese/Paxinos Atlas by aligning the T2-like Calabrese atlas to the NMT v2 + Refined Paxinos labels using segmentation + Added Paxinos cerebral white matter label to segmentation to improve scGM/WM + Added label tables to segmentation ---------------------------------------------------------------------- directory version : 14 (Sneaky Salmon) date uploaded : 2020-05-29 updates: + Added ventricle mask to supplemental_masks + Removed tmp segmentation files ---------------------------------------------------------------------- directory version : 13 (Unlucky Unicorn) date uploaded : 2020-05-28 updates: + Modified NMT v2 FOV from 250 x 310 x 200 -> 256 x 312 x 200 + Modified NMT v2 low-res FOV from 125 x 155 x 100 -> 128 x 156 x 100 + Added NMT_changelog.txt + Added label tables to D99 and CHARM ----------------------------------------------------------------------