Progress Report / Log
Started at Tue Mar 22 12:38:09 CET 2016
cp -r ../.files .files
Higher-level stats
cat ../design.lcon | awk '{ print }' > design.lcon
/usr/share/fsl/5.0/bin/fslsplit mask tmpmask -z
/usr/share/fsl/5.0/bin/fslsplit filtered_func_data tmpcope -z
/usr/share/fsl/5.0/bin/fslsplit var_filtered_func_data tmpvarcope -z
/usr/share/fsl/5.0/bin/flameo --cope=tmpcope0000 --vc=tmpvarcope0000 --mask=tmpmask0000 --ld=stats0000 --dm=design.mat --cs=design.grp --tc=design.con --io --runmode=flame1
Log directory is: stats0000
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0000, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=194
Running:
nmaskvoxels=194
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=194
Saving results
Log directory was: stats0000
Log directory is: stats0009
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0009, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2918
Running:
nmaskvoxels=2918
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2918
Saving results
Log directory was: stats0009
Log directory is: stats0010
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0010, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3072
Running:
nmaskvoxels=3072
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3072
Saving results
Log directory was: stats0010
Log directory is: stats0011
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0011, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3213
Running:
nmaskvoxels=3213
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3213
Saving results
Log directory was: stats0011
Log directory is: stats0012
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0012, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3336
Running:
nmaskvoxels=3336
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3336
Saving results
Log directory was: stats0012
Log directory is: stats0013
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0013, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3415
Running:
nmaskvoxels=3415
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3415
Saving results
Log directory was: stats0013
Log directory is: stats0014
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0014, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3466
Running:
nmaskvoxels=3466
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3466
Saving results
Log directory was: stats0014
Log directory is: stats0015
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0015, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3487
Running:
nmaskvoxels=3487
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3487
Saving results
Log directory was: stats0015
Log directory is: stats0016
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0016, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3520
Running:
nmaskvoxels=3520
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3520
Saving results
Log directory was: stats0016
Log directory is: stats0017
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0017, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3540
Running:
nmaskvoxels=3540
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3540
Saving results
Log directory was: stats0017
Log directory is: stats0018
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0018, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3529
Running:
nmaskvoxels=3529
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3529
Saving results
Log directory was: stats0018
Log directory is: stats0001
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0001, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1809
Running:
nmaskvoxels=1809
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1809
Saving results
Log directory was: stats0001
Log directory is: stats0019
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0019, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3516
Running:
nmaskvoxels=3516
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3516
Saving results
Log directory was: stats0019
Log directory is: stats0020
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0020, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3491
Running:
nmaskvoxels=3491
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3491
Saving results
Log directory was: stats0020
Log directory is: stats0021
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0021, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3475
Running:
nmaskvoxels=3475
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3475
Saving results
Log directory was: stats0021
Log directory is: stats0022
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0022, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3435
Running:
nmaskvoxels=3435
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3435
Saving results
Log directory was: stats0022
Log directory is: stats0023
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0023, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3406
Running:
nmaskvoxels=3406
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3406
Saving results
Log directory was: stats0023
Log directory is: stats0024
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0024, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3350
Running:
nmaskvoxels=3350
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3350
Saving results
Log directory was: stats0024
Log directory is: stats0025
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0025, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3293
Running:
nmaskvoxels=3293
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3293
Saving results
Log directory was: stats0025
Log directory is: stats0026
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0026, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3183
Running:
nmaskvoxels=3183
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3183
Saving results
Log directory was: stats0026
Log directory is: stats0027
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0027, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3088
Running:
nmaskvoxels=3088
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3088
Saving results
Log directory was: stats0027
Log directory is: stats0028
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0028, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3004
Running:
nmaskvoxels=3004
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3004
Saving results
Log directory was: stats0028
Log directory is: stats0002
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0002, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2021
Running:
nmaskvoxels=2021
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2021
Saving results
Log directory was: stats0002
Log directory is: stats0029
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0029, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2893
Running:
nmaskvoxels=2893
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2893
Saving results
Log directory was: stats0029
Log directory is: stats0030
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0030, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2777
Running:
nmaskvoxels=2777
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2777
Saving results
Log directory was: stats0030
Log directory is: stats0031
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0031, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2636
Running:
nmaskvoxels=2636
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2636
Saving results
Log directory was: stats0031
Log directory is: stats0032
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0032, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2501
Running:
nmaskvoxels=2501
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2501
Saving results
Log directory was: stats0032
Log directory is: stats0033
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0033, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2353
Running:
nmaskvoxels=2353
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2353
Saving results
Log directory was: stats0033
Log directory is: stats0034
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0034, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2184
Running:
nmaskvoxels=2184
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2184
Saving results
Log directory was: stats0034
Log directory is: stats0035
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0035, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2027
Running:
nmaskvoxels=2027
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2027
Saving results
Log directory was: stats0035
Log directory is: stats0036
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0036, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1878
Running:
nmaskvoxels=1878
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1878
Saving results
Log directory was: stats0036
Log directory is: stats0037
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0037, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1712
Running:
nmaskvoxels=1712
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1712
Saving results
Log directory was: stats0037
Log directory is: stats0038
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0038, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1540
Running:
nmaskvoxels=1540
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1540
Saving results
Log directory was: stats0038
Log directory is: stats0003
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0003, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2254
Running:
nmaskvoxels=2254
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2254
Saving results
Log directory was: stats0003
Log directory is: stats0039
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0039, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1369
Running:
nmaskvoxels=1369
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1369
Saving results
Log directory was: stats0039
Log directory is: stats0040
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0040, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1178
Running:
nmaskvoxels=1178
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1178
Saving results
Log directory was: stats0040
Log directory is: stats0041
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0041, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=996
Running:
nmaskvoxels=996
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=996
Saving results
Log directory was: stats0041
Log directory is: stats0042
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0042, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=808
Running:
nmaskvoxels=808
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=808
Saving results
Log directory was: stats0042
Log directory is: stats0043
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0043, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=602
Running:
nmaskvoxels=602
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=602
Saving results
Log directory was: stats0043
Log directory is: stats0044
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0044, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=396
Running:
nmaskvoxels=396
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=396
Saving results
Log directory was: stats0044
Log directory is: stats0004
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0004, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2399
Running:
nmaskvoxels=2399
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2399
Saving results
Log directory was: stats0004
Log directory is: stats0005
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0005, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2530
Running:
nmaskvoxels=2530
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2530
Saving results
Log directory was: stats0005
Log directory is: stats0006
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0006, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2625
Running:
nmaskvoxels=2625
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2625
Saving results
Log directory was: stats0006
Log directory is: stats0007
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0007, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2715
Running:
nmaskvoxels=2715
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2715
Saving results
Log directory was: stats0007
Log directory is: stats0008
Setting up:
ntptsing=4.000000
evs_group=1.000000
No f contrasts
WARNING: The passed in varcope file, tmpvarcope0008, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2801
Running:
nmaskvoxels=2801
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2801
Saving results
Log directory was: stats0008
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/cope1.nii.gz stats0000/cope1 stats0001/cope1 stats0002/cope1 stats0003/cope1 stats0004/cope1 stats0005/cope1 stats0006/cope1 stats0007/cope1 stats0008/cope1 stats0009/cope1 stats0010/cope1 stats0011/cope1 stats0012/cope1 stats0013/cope1 stats0014/cope1 stats0015/cope1 stats0016/cope1 stats0017/cope1 stats0018/cope1 stats0019/cope1 stats0020/cope1 stats0021/cope1 stats0022/cope1 stats0023/cope1 stats0024/cope1 stats0025/cope1 stats0026/cope1 stats0027/cope1 stats0028/cope1 stats0029/cope1 stats0030/cope1 stats0031/cope1 stats0032/cope1 stats0033/cope1 stats0034/cope1 stats0035/cope1 stats0036/cope1 stats0037/cope1 stats0038/cope1 stats0039/cope1 stats0040/cope1 stats0041/cope1 stats0042/cope1 stats0043/cope1 stats0044/cope1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/global_prob_outlier1.nii.gz stats0000/global_prob_outlier1 stats0001/global_prob_outlier1 stats0002/global_prob_outlier1 stats0003/global_prob_outlier1 stats0004/global_prob_outlier1 stats0005/global_prob_outlier1 stats0006/global_prob_outlier1 stats0007/global_prob_outlier1 stats0008/global_prob_outlier1 stats0009/global_prob_outlier1 stats0010/global_prob_outlier1 stats0011/global_prob_outlier1 stats0012/global_prob_outlier1 stats0013/global_prob_outlier1 stats0014/global_prob_outlier1 stats0015/global_prob_outlier1 stats0016/global_prob_outlier1 stats0017/global_prob_outlier1 stats0018/global_prob_outlier1 stats0019/global_prob_outlier1 stats0020/global_prob_outlier1 stats0021/global_prob_outlier1 stats0022/global_prob_outlier1 stats0023/global_prob_outlier1 stats0024/global_prob_outlier1 stats0025/global_prob_outlier1 stats0026/global_prob_outlier1 stats0027/global_prob_outlier1 stats0028/global_prob_outlier1 stats0029/global_prob_outlier1 stats0030/global_prob_outlier1 stats0031/global_prob_outlier1 stats0032/global_prob_outlier1 stats0033/global_prob_outlier1 stats0034/global_prob_outlier1 stats0035/global_prob_outlier1 stats0036/global_prob_outlier1 stats0037/global_prob_outlier1 stats0038/global_prob_outlier1 stats0039/global_prob_outlier1 stats0040/global_prob_outlier1 stats0041/global_prob_outlier1 stats0042/global_prob_outlier1 stats0043/global_prob_outlier1 stats0044/global_prob_outlier1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/mask.nii.gz stats0000/mask stats0001/mask stats0002/mask stats0003/mask stats0004/mask stats0005/mask stats0006/mask stats0007/mask stats0008/mask stats0009/mask stats0010/mask stats0011/mask stats0012/mask stats0013/mask stats0014/mask stats0015/mask stats0016/mask stats0017/mask stats0018/mask stats0019/mask stats0020/mask stats0021/mask stats0022/mask stats0023/mask stats0024/mask stats0025/mask stats0026/mask stats0027/mask stats0028/mask stats0029/mask stats0030/mask stats0031/mask stats0032/mask stats0033/mask stats0034/mask stats0035/mask stats0036/mask stats0037/mask stats0038/mask stats0039/mask stats0040/mask stats0041/mask stats0042/mask stats0043/mask stats0044/mask
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/mean_outlier_random_effects_var1.nii.gz stats0000/mean_outlier_random_effects_var1 stats0001/mean_outlier_random_effects_var1 stats0002/mean_outlier_random_effects_var1 stats0003/mean_outlier_random_effects_var1 stats0004/mean_outlier_random_effects_var1 stats0005/mean_outlier_random_effects_var1 stats0006/mean_outlier_random_effects_var1 stats0007/mean_outlier_random_effects_var1 stats0008/mean_outlier_random_effects_var1 stats0009/mean_outlier_random_effects_var1 stats0010/mean_outlier_random_effects_var1 stats0011/mean_outlier_random_effects_var1 stats0012/mean_outlier_random_effects_var1 stats0013/mean_outlier_random_effects_var1 stats0014/mean_outlier_random_effects_var1 stats0015/mean_outlier_random_effects_var1 stats0016/mean_outlier_random_effects_var1 stats0017/mean_outlier_random_effects_var1 stats0018/mean_outlier_random_effects_var1 stats0019/mean_outlier_random_effects_var1 stats0020/mean_outlier_random_effects_var1 stats0021/mean_outlier_random_effects_var1 stats0022/mean_outlier_random_effects_var1 stats0023/mean_outlier_random_effects_var1 stats0024/mean_outlier_random_effects_var1 stats0025/mean_outlier_random_effects_var1 stats0026/mean_outlier_random_effects_var1 stats0027/mean_outlier_random_effects_var1 stats0028/mean_outlier_random_effects_var1 stats0029/mean_outlier_random_effects_var1 stats0030/mean_outlier_random_effects_var1 stats0031/mean_outlier_random_effects_var1 stats0032/mean_outlier_random_effects_var1 stats0033/mean_outlier_random_effects_var1 stats0034/mean_outlier_random_effects_var1 stats0035/mean_outlier_random_effects_var1 stats0036/mean_outlier_random_effects_var1 stats0037/mean_outlier_random_effects_var1 stats0038/mean_outlier_random_effects_var1 stats0039/mean_outlier_random_effects_var1 stats0040/mean_outlier_random_effects_var1 stats0041/mean_outlier_random_effects_var1 stats0042/mean_outlier_random_effects_var1 stats0043/mean_outlier_random_effects_var1 stats0044/mean_outlier_random_effects_var1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/mean_random_effects_var1.nii.gz stats0000/mean_random_effects_var1 stats0001/mean_random_effects_var1 stats0002/mean_random_effects_var1 stats0003/mean_random_effects_var1 stats0004/mean_random_effects_var1 stats0005/mean_random_effects_var1 stats0006/mean_random_effects_var1 stats0007/mean_random_effects_var1 stats0008/mean_random_effects_var1 stats0009/mean_random_effects_var1 stats0010/mean_random_effects_var1 stats0011/mean_random_effects_var1 stats0012/mean_random_effects_var1 stats0013/mean_random_effects_var1 stats0014/mean_random_effects_var1 stats0015/mean_random_effects_var1 stats0016/mean_random_effects_var1 stats0017/mean_random_effects_var1 stats0018/mean_random_effects_var1 stats0019/mean_random_effects_var1 stats0020/mean_random_effects_var1 stats0021/mean_random_effects_var1 stats0022/mean_random_effects_var1 stats0023/mean_random_effects_var1 stats0024/mean_random_effects_var1 stats0025/mean_random_effects_var1 stats0026/mean_random_effects_var1 stats0027/mean_random_effects_var1 stats0028/mean_random_effects_var1 stats0029/mean_random_effects_var1 stats0030/mean_random_effects_var1 stats0031/mean_random_effects_var1 stats0032/mean_random_effects_var1 stats0033/mean_random_effects_var1 stats0034/mean_random_effects_var1 stats0035/mean_random_effects_var1 stats0036/mean_random_effects_var1 stats0037/mean_random_effects_var1 stats0038/mean_random_effects_var1 stats0039/mean_random_effects_var1 stats0040/mean_random_effects_var1 stats0041/mean_random_effects_var1 stats0042/mean_random_effects_var1 stats0043/mean_random_effects_var1 stats0044/mean_random_effects_var1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/pe1.nii.gz stats0000/pe1 stats0001/pe1 stats0002/pe1 stats0003/pe1 stats0004/pe1 stats0005/pe1 stats0006/pe1 stats0007/pe1 stats0008/pe1 stats0009/pe1 stats0010/pe1 stats0011/pe1 stats0012/pe1 stats0013/pe1 stats0014/pe1 stats0015/pe1 stats0016/pe1 stats0017/pe1 stats0018/pe1 stats0019/pe1 stats0020/pe1 stats0021/pe1 stats0022/pe1 stats0023/pe1 stats0024/pe1 stats0025/pe1 stats0026/pe1 stats0027/pe1 stats0028/pe1 stats0029/pe1 stats0030/pe1 stats0031/pe1 stats0032/pe1 stats0033/pe1 stats0034/pe1 stats0035/pe1 stats0036/pe1 stats0037/pe1 stats0038/pe1 stats0039/pe1 stats0040/pe1 stats0041/pe1 stats0042/pe1 stats0043/pe1 stats0044/pe1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/prob_outlier1.nii.gz stats0000/prob_outlier1 stats0001/prob_outlier1 stats0002/prob_outlier1 stats0003/prob_outlier1 stats0004/prob_outlier1 stats0005/prob_outlier1 stats0006/prob_outlier1 stats0007/prob_outlier1 stats0008/prob_outlier1 stats0009/prob_outlier1 stats0010/prob_outlier1 stats0011/prob_outlier1 stats0012/prob_outlier1 stats0013/prob_outlier1 stats0014/prob_outlier1 stats0015/prob_outlier1 stats0016/prob_outlier1 stats0017/prob_outlier1 stats0018/prob_outlier1 stats0019/prob_outlier1 stats0020/prob_outlier1 stats0021/prob_outlier1 stats0022/prob_outlier1 stats0023/prob_outlier1 stats0024/prob_outlier1 stats0025/prob_outlier1 stats0026/prob_outlier1 stats0027/prob_outlier1 stats0028/prob_outlier1 stats0029/prob_outlier1 stats0030/prob_outlier1 stats0031/prob_outlier1 stats0032/prob_outlier1 stats0033/prob_outlier1 stats0034/prob_outlier1 stats0035/prob_outlier1 stats0036/prob_outlier1 stats0037/prob_outlier1 stats0038/prob_outlier1 stats0039/prob_outlier1 stats0040/prob_outlier1 stats0041/prob_outlier1 stats0042/prob_outlier1 stats0043/prob_outlier1 stats0044/prob_outlier1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/res4d.nii.gz stats0000/res4d stats0001/res4d stats0002/res4d stats0003/res4d stats0004/res4d stats0005/res4d stats0006/res4d stats0007/res4d stats0008/res4d stats0009/res4d stats0010/res4d stats0011/res4d stats0012/res4d stats0013/res4d stats0014/res4d stats0015/res4d stats0016/res4d stats0017/res4d stats0018/res4d stats0019/res4d stats0020/res4d stats0021/res4d stats0022/res4d stats0023/res4d stats0024/res4d stats0025/res4d stats0026/res4d stats0027/res4d stats0028/res4d stats0029/res4d stats0030/res4d stats0031/res4d stats0032/res4d stats0033/res4d stats0034/res4d stats0035/res4d stats0036/res4d stats0037/res4d stats0038/res4d stats0039/res4d stats0040/res4d stats0041/res4d stats0042/res4d stats0043/res4d stats0044/res4d
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/tdof_t1.nii.gz stats0000/tdof_t1 stats0001/tdof_t1 stats0002/tdof_t1 stats0003/tdof_t1 stats0004/tdof_t1 stats0005/tdof_t1 stats0006/tdof_t1 stats0007/tdof_t1 stats0008/tdof_t1 stats0009/tdof_t1 stats0010/tdof_t1 stats0011/tdof_t1 stats0012/tdof_t1 stats0013/tdof_t1 stats0014/tdof_t1 stats0015/tdof_t1 stats0016/tdof_t1 stats0017/tdof_t1 stats0018/tdof_t1 stats0019/tdof_t1 stats0020/tdof_t1 stats0021/tdof_t1 stats0022/tdof_t1 stats0023/tdof_t1 stats0024/tdof_t1 stats0025/tdof_t1 stats0026/tdof_t1 stats0027/tdof_t1 stats0028/tdof_t1 stats0029/tdof_t1 stats0030/tdof_t1 stats0031/tdof_t1 stats0032/tdof_t1 stats0033/tdof_t1 stats0034/tdof_t1 stats0035/tdof_t1 stats0036/tdof_t1 stats0037/tdof_t1 stats0038/tdof_t1 stats0039/tdof_t1 stats0040/tdof_t1 stats0041/tdof_t1 stats0042/tdof_t1 stats0043/tdof_t1 stats0044/tdof_t1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/tstat1.nii.gz stats0000/tstat1 stats0001/tstat1 stats0002/tstat1 stats0003/tstat1 stats0004/tstat1 stats0005/tstat1 stats0006/tstat1 stats0007/tstat1 stats0008/tstat1 stats0009/tstat1 stats0010/tstat1 stats0011/tstat1 stats0012/tstat1 stats0013/tstat1 stats0014/tstat1 stats0015/tstat1 stats0016/tstat1 stats0017/tstat1 stats0018/tstat1 stats0019/tstat1 stats0020/tstat1 stats0021/tstat1 stats0022/tstat1 stats0023/tstat1 stats0024/tstat1 stats0025/tstat1 stats0026/tstat1 stats0027/tstat1 stats0028/tstat1 stats0029/tstat1 stats0030/tstat1 stats0031/tstat1 stats0032/tstat1 stats0033/tstat1 stats0034/tstat1 stats0035/tstat1 stats0036/tstat1 stats0037/tstat1 stats0038/tstat1 stats0039/tstat1 stats0040/tstat1 stats0041/tstat1 stats0042/tstat1 stats0043/tstat1 stats0044/tstat1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/varcope1.nii.gz stats0000/varcope1 stats0001/varcope1 stats0002/varcope1 stats0003/varcope1 stats0004/varcope1 stats0005/varcope1 stats0006/varcope1 stats0007/varcope1 stats0008/varcope1 stats0009/varcope1 stats0010/varcope1 stats0011/varcope1 stats0012/varcope1 stats0013/varcope1 stats0014/varcope1 stats0015/varcope1 stats0016/varcope1 stats0017/varcope1 stats0018/varcope1 stats0019/varcope1 stats0020/varcope1 stats0021/varcope1 stats0022/varcope1 stats0023/varcope1 stats0024/varcope1 stats0025/varcope1 stats0026/varcope1 stats0027/varcope1 stats0028/varcope1 stats0029/varcope1 stats0030/varcope1 stats0031/varcope1 stats0032/varcope1 stats0033/varcope1 stats0034/varcope1 stats0035/varcope1 stats0036/varcope1 stats0037/varcope1 stats0038/varcope1 stats0039/varcope1 stats0040/varcope1 stats0041/varcope1 stats0042/varcope1 stats0043/varcope1 stats0044/varcope1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/weights1.nii.gz stats0000/weights1 stats0001/weights1 stats0002/weights1 stats0003/weights1 stats0004/weights1 stats0005/weights1 stats0006/weights1 stats0007/weights1 stats0008/weights1 stats0009/weights1 stats0010/weights1 stats0011/weights1 stats0012/weights1 stats0013/weights1 stats0014/weights1 stats0015/weights1 stats0016/weights1 stats0017/weights1 stats0018/weights1 stats0019/weights1 stats0020/weights1 stats0021/weights1 stats0022/weights1 stats0023/weights1 stats0024/weights1 stats0025/weights1 stats0026/weights1 stats0027/weights1 stats0028/weights1 stats0029/weights1 stats0030/weights1 stats0031/weights1 stats0032/weights1 stats0033/weights1 stats0034/weights1 stats0035/weights1 stats0036/weights1 stats0037/weights1 stats0038/weights1 stats0039/weights1 stats0040/weights1 stats0041/weights1 stats0042/weights1 stats0043/weights1 stats0044/weights1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1lowertstat1.nii.gz stats0000/zflame1lowertstat1 stats0001/zflame1lowertstat1 stats0002/zflame1lowertstat1 stats0003/zflame1lowertstat1 stats0004/zflame1lowertstat1 stats0005/zflame1lowertstat1 stats0006/zflame1lowertstat1 stats0007/zflame1lowertstat1 stats0008/zflame1lowertstat1 stats0009/zflame1lowertstat1 stats0010/zflame1lowertstat1 stats0011/zflame1lowertstat1 stats0012/zflame1lowertstat1 stats0013/zflame1lowertstat1 stats0014/zflame1lowertstat1 stats0015/zflame1lowertstat1 stats0016/zflame1lowertstat1 stats0017/zflame1lowertstat1 stats0018/zflame1lowertstat1 stats0019/zflame1lowertstat1 stats0020/zflame1lowertstat1 stats0021/zflame1lowertstat1 stats0022/zflame1lowertstat1 stats0023/zflame1lowertstat1 stats0024/zflame1lowertstat1 stats0025/zflame1lowertstat1 stats0026/zflame1lowertstat1 stats0027/zflame1lowertstat1 stats0028/zflame1lowertstat1 stats0029/zflame1lowertstat1 stats0030/zflame1lowertstat1 stats0031/zflame1lowertstat1 stats0032/zflame1lowertstat1 stats0033/zflame1lowertstat1 stats0034/zflame1lowertstat1 stats0035/zflame1lowertstat1 stats0036/zflame1lowertstat1 stats0037/zflame1lowertstat1 stats0038/zflame1lowertstat1 stats0039/zflame1lowertstat1 stats0040/zflame1lowertstat1 stats0041/zflame1lowertstat1 stats0042/zflame1lowertstat1 stats0043/zflame1lowertstat1 stats0044/zflame1lowertstat1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1uppertstat1.nii.gz stats0000/zflame1uppertstat1 stats0001/zflame1uppertstat1 stats0002/zflame1uppertstat1 stats0003/zflame1uppertstat1 stats0004/zflame1uppertstat1 stats0005/zflame1uppertstat1 stats0006/zflame1uppertstat1 stats0007/zflame1uppertstat1 stats0008/zflame1uppertstat1 stats0009/zflame1uppertstat1 stats0010/zflame1uppertstat1 stats0011/zflame1uppertstat1 stats0012/zflame1uppertstat1 stats0013/zflame1uppertstat1 stats0014/zflame1uppertstat1 stats0015/zflame1uppertstat1 stats0016/zflame1uppertstat1 stats0017/zflame1uppertstat1 stats0018/zflame1uppertstat1 stats0019/zflame1uppertstat1 stats0020/zflame1uppertstat1 stats0021/zflame1uppertstat1 stats0022/zflame1uppertstat1 stats0023/zflame1uppertstat1 stats0024/zflame1uppertstat1 stats0025/zflame1uppertstat1 stats0026/zflame1uppertstat1 stats0027/zflame1uppertstat1 stats0028/zflame1uppertstat1 stats0029/zflame1uppertstat1 stats0030/zflame1uppertstat1 stats0031/zflame1uppertstat1 stats0032/zflame1uppertstat1 stats0033/zflame1uppertstat1 stats0034/zflame1uppertstat1 stats0035/zflame1uppertstat1 stats0036/zflame1uppertstat1 stats0037/zflame1uppertstat1 stats0038/zflame1uppertstat1 stats0039/zflame1uppertstat1 stats0040/zflame1uppertstat1 stats0041/zflame1uppertstat1 stats0042/zflame1uppertstat1 stats0043/zflame1uppertstat1 stats0044/zflame1uppertstat1
/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zstat1.nii.gz stats0000/zstat1 stats0001/zstat1 stats0002/zstat1 stats0003/zstat1 stats0004/zstat1 stats0005/zstat1 stats0006/zstat1 stats0007/zstat1 stats0008/zstat1 stats0009/zstat1 stats0010/zstat1 stats0011/zstat1 stats0012/zstat1 stats0013/zstat1 stats0014/zstat1 stats0015/zstat1 stats0016/zstat1 stats0017/zstat1 stats0018/zstat1 stats0019/zstat1 stats0020/zstat1 stats0021/zstat1 stats0022/zstat1 stats0023/zstat1 stats0024/zstat1 stats0025/zstat1 stats0026/zstat1 stats0027/zstat1 stats0028/zstat1 stats0029/zstat1 stats0030/zstat1 stats0031/zstat1 stats0032/zstat1 stats0033/zstat1 stats0034/zstat1 stats0035/zstat1 stats0036/zstat1 stats0037/zstat1 stats0038/zstat1 stats0039/zstat1 stats0040/zstat1 stats0041/zstat1 stats0042/zstat1 stats0043/zstat1 stats0044/zstat1
/bin/mv stats0000 stats ; /bin/rm -rf stats?* tmp*
/bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
/usr/share/fsl/5.0/bin/smoothest -d 3 -m mask -r stats/res4d > stats/smoothness
Post-stats
/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
echo 113935 > thresh_zstat1.vol
zstat1: DLH=0.174288 VOLUME=113935 RESELS=29.1376
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 1.64 -p 0.05 -d 0.174288 --volume=113935 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
/usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
0.000000 0.000000
Rendering using zmin=2.3 zmax=8
/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.3 8 rendered_thresh_zstat1
/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif