Progress Report / Log

Started at Tue Mar 22 11:23:39 CET 2016


cp -r ../.files .files

Higher-level stats

cat ../design.lcon | awk '{ print  }' > design.lcon

/usr/share/fsl/5.0/bin/fslsplit mask tmpmask -z

/usr/share/fsl/5.0/bin/fslsplit filtered_func_data tmpcope -z

/usr/share/fsl/5.0/bin/fslsplit var_filtered_func_data tmpvarcope -z
/usr/share/fsl/5.0/bin/flameo --cope=tmpcope0000 --vc=tmpvarcope0000  --mask=tmpmask0000 --ld=stats0000 --dm=design.mat --cs=design.grp --tc=design.con  --io --runmode=flame1
Log directory is: stats0000
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0000, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=284
Running:
nmaskvoxels=284
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=284
Saving results

Log directory was: stats0000
Log directory is: stats0009
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0009, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2664
Running:
nmaskvoxels=2664
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2664
Saving results

Log directory was: stats0009
Log directory is: stats0010
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0010, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2798
Running:
nmaskvoxels=2798
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2798
Saving results

Log directory was: stats0010
Log directory is: stats0011
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0011, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2914
Running:
nmaskvoxels=2914
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2914
Saving results

Log directory was: stats0011
Log directory is: stats0012
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0012, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3036
Running:
nmaskvoxels=3036
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3036
Saving results

Log directory was: stats0012
Log directory is: stats0013
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0013, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3092
Running:
nmaskvoxels=3092
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3092
Saving results

Log directory was: stats0013
Log directory is: stats0014
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0014, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3152
Running:
nmaskvoxels=3152
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3152
Saving results

Log directory was: stats0014
Log directory is: stats0015
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0015, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3223
Running:
nmaskvoxels=3223
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3223
Saving results

Log directory was: stats0015
Log directory is: stats0016
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0016, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3271
Running:
nmaskvoxels=3271
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3271
Saving results

Log directory was: stats0016
Log directory is: stats0017
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0017, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3360
Running:
nmaskvoxels=3360
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3360
Saving results

Log directory was: stats0017
Log directory is: stats0018
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0018, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3406
Running:
nmaskvoxels=3406
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3406
Saving results

Log directory was: stats0018
Log directory is: stats0001
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0001, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1354
Running:
nmaskvoxels=1354
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1354
Saving results

Log directory was: stats0001
Log directory is: stats0019
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0019, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3441
Running:
nmaskvoxels=3441
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3441
Saving results

Log directory was: stats0019
Log directory is: stats0020
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0020, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3446
Running:
nmaskvoxels=3446
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3446
Saving results

Log directory was: stats0020
Log directory is: stats0021
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0021, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3432
Running:
nmaskvoxels=3432
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3432
Saving results

Log directory was: stats0021
Log directory is: stats0022
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0022, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3429
Running:
nmaskvoxels=3429
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3429
Saving results

Log directory was: stats0022
Log directory is: stats0023
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0023, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3425
Running:
nmaskvoxels=3425
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3425
Saving results

Log directory was: stats0023
Log directory is: stats0024
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0024, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3421
Running:
nmaskvoxels=3421
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3421
Saving results

Log directory was: stats0024
Log directory is: stats0025
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0025, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3384
Running:
nmaskvoxels=3384
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3384
Saving results

Log directory was: stats0025
Log directory is: stats0026
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0026, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3323
Running:
nmaskvoxels=3323
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3323
Saving results

Log directory was: stats0026
Log directory is: stats0027
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0027, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3241
Running:
nmaskvoxels=3241
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3241
Saving results

Log directory was: stats0027
Log directory is: stats0028
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0028, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3156
Running:
nmaskvoxels=3156
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3156
Saving results

Log directory was: stats0028
Log directory is: stats0002
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0002, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1563
Running:
nmaskvoxels=1563
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1563
Saving results

Log directory was: stats0002
Log directory is: stats0029
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0029, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=3048
Running:
nmaskvoxels=3048
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=3048
Saving results

Log directory was: stats0029
Log directory is: stats0030
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0030, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2955
Running:
nmaskvoxels=2955
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2955
Saving results

Log directory was: stats0030
Log directory is: stats0031
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0031, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2843
Running:
nmaskvoxels=2843
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2843
Saving results

Log directory was: stats0031
Log directory is: stats0032
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0032, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2700
Running:
nmaskvoxels=2700
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2700
Saving results

Log directory was: stats0032
Log directory is: stats0033
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0033, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2555
Running:
nmaskvoxels=2555
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2555
Saving results

Log directory was: stats0033
Log directory is: stats0034
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0034, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2390
Running:
nmaskvoxels=2390
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2390
Saving results

Log directory was: stats0034
Log directory is: stats0035
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0035, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2234
Running:
nmaskvoxels=2234
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2234
Saving results

Log directory was: stats0035
Log directory is: stats0036
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0036, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2074
Running:
nmaskvoxels=2074
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2074
Saving results

Log directory was: stats0036
Log directory is: stats0037
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0037, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1906
Running:
nmaskvoxels=1906
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1906
Saving results

Log directory was: stats0037
Log directory is: stats0038
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0038, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1746
Running:
nmaskvoxels=1746
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1746
Saving results

Log directory was: stats0038
Log directory is: stats0003
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0003, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1791
Running:
nmaskvoxels=1791
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1791
Saving results

Log directory was: stats0003
Log directory is: stats0039
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0039, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1569
Running:
nmaskvoxels=1569
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1569
Saving results

Log directory was: stats0039
Log directory is: stats0040
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0040, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1399
Running:
nmaskvoxels=1399
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1399
Saving results

Log directory was: stats0040
Log directory is: stats0041
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0041, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1219
Running:
nmaskvoxels=1219
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1219
Saving results

Log directory was: stats0041
Log directory is: stats0042
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0042, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1035
Running:
nmaskvoxels=1035
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1035
Saving results

Log directory was: stats0042
Log directory is: stats0043
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0043, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=852
Running:
nmaskvoxels=852
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=852
Saving results

Log directory was: stats0043
Log directory is: stats0044
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0044, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=639
Running:
nmaskvoxels=639
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=639
Saving results

Log directory was: stats0044
Log directory is: stats0004
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0004, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=1978
Running:
nmaskvoxels=1978
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=1978
Saving results

Log directory was: stats0004
Log directory is: stats0005
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0005, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2154
Running:
nmaskvoxels=2154
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2154
Saving results

Log directory was: stats0005
Log directory is: stats0006
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0006, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2320
Running:
nmaskvoxels=2320
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2320
Saving results

Log directory was: stats0006
Log directory is: stats0007
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0007, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2454
Running:
nmaskvoxels=2454
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2454
Saving results

Log directory was: stats0007
Log directory is: stats0008
Setting up:
ntptsing=4.000000 

evs_group=1.000000 

No f contrasts

WARNING: The passed in varcope file, tmpvarcope0008, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
nevs=1
ntpts=4
ngs=1
nvoxels=2560
Running:
nmaskvoxels=2560
 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
nmaskvoxels=2560
Saving results

Log directory was: stats0008

/usr/share/fsl/5.0/bin/fslmerge -z stats0000/cope1.nii.gz stats0000/cope1 stats0001/cope1 stats0002/cope1 stats0003/cope1 stats0004/cope1 stats0005/cope1 stats0006/cope1 stats0007/cope1 stats0008/cope1 stats0009/cope1 stats0010/cope1 stats0011/cope1 stats0012/cope1 stats0013/cope1 stats0014/cope1 stats0015/cope1 stats0016/cope1 stats0017/cope1 stats0018/cope1 stats0019/cope1 stats0020/cope1 stats0021/cope1 stats0022/cope1 stats0023/cope1 stats0024/cope1 stats0025/cope1 stats0026/cope1 stats0027/cope1 stats0028/cope1 stats0029/cope1 stats0030/cope1 stats0031/cope1 stats0032/cope1 stats0033/cope1 stats0034/cope1 stats0035/cope1 stats0036/cope1 stats0037/cope1 stats0038/cope1 stats0039/cope1 stats0040/cope1 stats0041/cope1 stats0042/cope1 stats0043/cope1 stats0044/cope1

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/usr/share/fsl/5.0/bin/fslmerge -z stats0000/mask.nii.gz stats0000/mask stats0001/mask stats0002/mask stats0003/mask stats0004/mask stats0005/mask stats0006/mask stats0007/mask stats0008/mask stats0009/mask stats0010/mask stats0011/mask stats0012/mask stats0013/mask stats0014/mask stats0015/mask stats0016/mask stats0017/mask stats0018/mask stats0019/mask stats0020/mask stats0021/mask stats0022/mask stats0023/mask stats0024/mask stats0025/mask stats0026/mask stats0027/mask stats0028/mask stats0029/mask stats0030/mask stats0031/mask stats0032/mask stats0033/mask stats0034/mask stats0035/mask stats0036/mask stats0037/mask stats0038/mask stats0039/mask stats0040/mask stats0041/mask stats0042/mask stats0043/mask stats0044/mask

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/usr/share/fsl/5.0/bin/fslmerge -z stats0000/weights1.nii.gz stats0000/weights1 stats0001/weights1 stats0002/weights1 stats0003/weights1 stats0004/weights1 stats0005/weights1 stats0006/weights1 stats0007/weights1 stats0008/weights1 stats0009/weights1 stats0010/weights1 stats0011/weights1 stats0012/weights1 stats0013/weights1 stats0014/weights1 stats0015/weights1 stats0016/weights1 stats0017/weights1 stats0018/weights1 stats0019/weights1 stats0020/weights1 stats0021/weights1 stats0022/weights1 stats0023/weights1 stats0024/weights1 stats0025/weights1 stats0026/weights1 stats0027/weights1 stats0028/weights1 stats0029/weights1 stats0030/weights1 stats0031/weights1 stats0032/weights1 stats0033/weights1 stats0034/weights1 stats0035/weights1 stats0036/weights1 stats0037/weights1 stats0038/weights1 stats0039/weights1 stats0040/weights1 stats0041/weights1 stats0042/weights1 stats0043/weights1 stats0044/weights1

/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1lowertstat1.nii.gz stats0000/zflame1lowertstat1 stats0001/zflame1lowertstat1 stats0002/zflame1lowertstat1 stats0003/zflame1lowertstat1 stats0004/zflame1lowertstat1 stats0005/zflame1lowertstat1 stats0006/zflame1lowertstat1 stats0007/zflame1lowertstat1 stats0008/zflame1lowertstat1 stats0009/zflame1lowertstat1 stats0010/zflame1lowertstat1 stats0011/zflame1lowertstat1 stats0012/zflame1lowertstat1 stats0013/zflame1lowertstat1 stats0014/zflame1lowertstat1 stats0015/zflame1lowertstat1 stats0016/zflame1lowertstat1 stats0017/zflame1lowertstat1 stats0018/zflame1lowertstat1 stats0019/zflame1lowertstat1 stats0020/zflame1lowertstat1 stats0021/zflame1lowertstat1 stats0022/zflame1lowertstat1 stats0023/zflame1lowertstat1 stats0024/zflame1lowertstat1 stats0025/zflame1lowertstat1 stats0026/zflame1lowertstat1 stats0027/zflame1lowertstat1 stats0028/zflame1lowertstat1 stats0029/zflame1lowertstat1 stats0030/zflame1lowertstat1 stats0031/zflame1lowertstat1 stats0032/zflame1lowertstat1 stats0033/zflame1lowertstat1 stats0034/zflame1lowertstat1 stats0035/zflame1lowertstat1 stats0036/zflame1lowertstat1 stats0037/zflame1lowertstat1 stats0038/zflame1lowertstat1 stats0039/zflame1lowertstat1 stats0040/zflame1lowertstat1 stats0041/zflame1lowertstat1 stats0042/zflame1lowertstat1 stats0043/zflame1lowertstat1 stats0044/zflame1lowertstat1

/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zflame1uppertstat1.nii.gz stats0000/zflame1uppertstat1 stats0001/zflame1uppertstat1 stats0002/zflame1uppertstat1 stats0003/zflame1uppertstat1 stats0004/zflame1uppertstat1 stats0005/zflame1uppertstat1 stats0006/zflame1uppertstat1 stats0007/zflame1uppertstat1 stats0008/zflame1uppertstat1 stats0009/zflame1uppertstat1 stats0010/zflame1uppertstat1 stats0011/zflame1uppertstat1 stats0012/zflame1uppertstat1 stats0013/zflame1uppertstat1 stats0014/zflame1uppertstat1 stats0015/zflame1uppertstat1 stats0016/zflame1uppertstat1 stats0017/zflame1uppertstat1 stats0018/zflame1uppertstat1 stats0019/zflame1uppertstat1 stats0020/zflame1uppertstat1 stats0021/zflame1uppertstat1 stats0022/zflame1uppertstat1 stats0023/zflame1uppertstat1 stats0024/zflame1uppertstat1 stats0025/zflame1uppertstat1 stats0026/zflame1uppertstat1 stats0027/zflame1uppertstat1 stats0028/zflame1uppertstat1 stats0029/zflame1uppertstat1 stats0030/zflame1uppertstat1 stats0031/zflame1uppertstat1 stats0032/zflame1uppertstat1 stats0033/zflame1uppertstat1 stats0034/zflame1uppertstat1 stats0035/zflame1uppertstat1 stats0036/zflame1uppertstat1 stats0037/zflame1uppertstat1 stats0038/zflame1uppertstat1 stats0039/zflame1uppertstat1 stats0040/zflame1uppertstat1 stats0041/zflame1uppertstat1 stats0042/zflame1uppertstat1 stats0043/zflame1uppertstat1 stats0044/zflame1uppertstat1

/usr/share/fsl/5.0/bin/fslmerge -z stats0000/zstat1.nii.gz stats0000/zstat1 stats0001/zstat1 stats0002/zstat1 stats0003/zstat1 stats0004/zstat1 stats0005/zstat1 stats0006/zstat1 stats0007/zstat1 stats0008/zstat1 stats0009/zstat1 stats0010/zstat1 stats0011/zstat1 stats0012/zstat1 stats0013/zstat1 stats0014/zstat1 stats0015/zstat1 stats0016/zstat1 stats0017/zstat1 stats0018/zstat1 stats0019/zstat1 stats0020/zstat1 stats0021/zstat1 stats0022/zstat1 stats0023/zstat1 stats0024/zstat1 stats0025/zstat1 stats0026/zstat1 stats0027/zstat1 stats0028/zstat1 stats0029/zstat1 stats0030/zstat1 stats0031/zstat1 stats0032/zstat1 stats0033/zstat1 stats0034/zstat1 stats0035/zstat1 stats0036/zstat1 stats0037/zstat1 stats0038/zstat1 stats0039/zstat1 stats0040/zstat1 stats0041/zstat1 stats0042/zstat1 stats0043/zstat1 stats0044/zstat1

/bin/mv stats0000 stats ; /bin/rm -rf stats?* tmp*

/bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats

/usr/share/fsl/5.0/bin/smoothest -d 3 -m mask -r stats/res4d > stats/smoothness

Post-stats

/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1

echo 112236 > thresh_zstat1.vol
zstat1: DLH=0.381982 VOLUME=112236 RESELS=13.2947

/usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 1.64 -p 0.05 -d 0.381982 --volume=112236 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt

/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std

/usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
1.640595 4.463719 
Rendering using zmin=1.640595 zmax=4.463719

/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 1.640595 4.463719 rendered_thresh_zstat1

/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif