cp -r ../.files .files
cat ../design.lcon | awk '{ print }' > design.lcon /usr/share/fsl/5.0/bin/fslsplit mask tmpmask -z /usr/share/fsl/5.0/bin/fslsplit filtered_func_data tmpcope -z /usr/share/fsl/5.0/bin/fslsplit var_filtered_func_data tmpvarcope -z /usr/share/fsl/5.0/bin/flameo --cope=tmpcope0000 --vc=tmpvarcope0000 --mask=tmpmask0000 --ld=stats0000 --dm=design.mat --cs=design.grp --tc=design.con --io --runmode=flame1 Log directory is: stats0000 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0000, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1180 Running: nmaskvoxels=1180 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1180 Saving results Log directory was: stats0000 Log directory is: stats0009 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0009, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2522 Running: nmaskvoxels=2522 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2522 Saving results Log directory was: stats0009 Log directory is: stats0010 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0010, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2597 Running: nmaskvoxels=2597 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2597 Saving results Log directory was: stats0010 Log directory is: stats0011 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0011, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2733 Running: nmaskvoxels=2733 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2733 Saving results Log directory was: stats0011 Log directory is: stats0012 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0012, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2908 Running: nmaskvoxels=2908 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2908 Saving results Log directory was: stats0012 Log directory is: stats0013 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0013, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2984 Running: nmaskvoxels=2984 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2984 Saving results Log directory was: stats0013 Log directory is: stats0014 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0014, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3045 Running: nmaskvoxels=3045 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3045 Saving results Log directory was: stats0014 Log directory is: stats0015 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0015, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3116 Running: nmaskvoxels=3116 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3116 Saving results Log directory was: stats0015 Log directory is: stats0016 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0016, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3159 Running: nmaskvoxels=3159 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3159 Saving results Log directory was: stats0016 Log directory is: stats0017 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0017, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3171 Running: nmaskvoxels=3171 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3171 Saving results Log directory was: stats0017 Log directory is: stats0018 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0018, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3184 Running: nmaskvoxels=3184 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3184 Saving results Log directory was: stats0018 Log directory is: stats0001 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0001, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1289 Running: nmaskvoxels=1289 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1289 Saving results Log directory was: stats0001 Log directory is: stats0019 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0019, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3185 Running: nmaskvoxels=3185 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3185 Saving results Log directory was: stats0019 Log directory is: stats0020 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0020, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3189 Running: nmaskvoxels=3189 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3189 Saving results Log directory was: stats0020 Log directory is: stats0021 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0021, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3170 Running: nmaskvoxels=3170 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3170 Saving results Log directory was: stats0021 Log directory is: stats0022 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0022, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3147 Running: nmaskvoxels=3147 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3147 Saving results Log directory was: stats0022 Log directory is: stats0023 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0023, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3108 Running: nmaskvoxels=3108 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3108 Saving results Log directory was: stats0023 Log directory is: stats0024 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0024, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=3044 Running: nmaskvoxels=3044 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=3044 Saving results Log directory was: stats0024 Log directory is: stats0025 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0025, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2976 Running: nmaskvoxels=2976 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2976 Saving results Log directory was: stats0025 Log directory is: stats0026 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0026, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2900 Running: nmaskvoxels=2900 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2900 Saving results Log directory was: stats0026 Log directory is: stats0027 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0027, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2798 Running: nmaskvoxels=2798 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2798 Saving results Log directory was: stats0027 Log directory is: stats0028 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0028, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2677 Running: nmaskvoxels=2677 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2677 Saving results Log directory was: stats0028 Log directory is: stats0002 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0002, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1448 Running: nmaskvoxels=1448 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1448 Saving results Log directory was: stats0002 Log directory is: stats0029 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0029, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2564 Running: nmaskvoxels=2564 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2564 Saving results Log directory was: stats0029 Log directory is: stats0030 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0030, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2454 Running: nmaskvoxels=2454 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2454 Saving results Log directory was: stats0030 Log directory is: stats0031 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0031, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2318 Running: nmaskvoxels=2318 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2318 Saving results Log directory was: stats0031 Log directory is: stats0032 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0032, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2159 Running: nmaskvoxels=2159 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2159 Saving results Log directory was: stats0032 Log directory is: stats0033 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0033, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2008 Running: nmaskvoxels=2008 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2008 Saving results Log directory was: stats0033 Log directory is: stats0034 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0034, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1867 Running: nmaskvoxels=1867 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1867 Saving results Log directory was: stats0034 Log directory is: stats0035 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0035, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1740 Running: nmaskvoxels=1740 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1740 Saving results Log directory was: stats0035 Log directory is: stats0036 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0036, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1592 Running: nmaskvoxels=1592 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1592 Saving results Log directory was: stats0036 Log directory is: stats0037 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0037, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1453 Running: nmaskvoxels=1453 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1453 Saving results Log directory was: stats0037 Log directory is: stats0038 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0038, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1312 Running: nmaskvoxels=1312 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1312 Saving results Log directory was: stats0038 Log directory is: stats0003 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0003, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1582 Running: nmaskvoxels=1582 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1582 Saving results Log directory was: stats0003 Log directory is: stats0039 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0039, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1161 Running: nmaskvoxels=1161 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1161 Saving results Log directory was: stats0039 Log directory is: stats0040 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0040, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1005 Running: nmaskvoxels=1005 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1005 Saving results Log directory was: stats0040 Log directory is: stats0041 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0041, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=814 Running: nmaskvoxels=814 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=814 Saving results Log directory was: stats0041 Log directory is: stats0042 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0042, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=643 Running: nmaskvoxels=643 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=643 Saving results Log directory was: stats0042 Log directory is: stats0043 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0043, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=507 Running: nmaskvoxels=507 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=507 Saving results Log directory was: stats0043 Log directory is: stats0044 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0044, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=357 Running: nmaskvoxels=357 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=357 Saving results Log directory was: stats0044 Log directory is: stats0004 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0004, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1744 Running: nmaskvoxels=1744 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1744 Saving results Log directory was: stats0004 Log directory is: stats0005 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0005, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=1955 Running: nmaskvoxels=1955 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=1955 Saving results Log directory was: stats0005 Log directory is: stats0006 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0006, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2108 Running: nmaskvoxels=2108 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2108 Saving results Log directory was: stats0006 Log directory is: stats0007 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0007, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis. nevs=1 ntpts=4 ngs=1 nvoxels=2275 Running: nmaskvoxels=2275 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 nmaskvoxels=2275 Saving results Log directory was: stats0007 Log directory is: stats0008 Setting up: ntptsing=4.000000 evs_group=1.000000 No f contrasts WARNING: The passed in varcope file, tmpvarcope0008, contains voxels inside the mask with zero (or negative) values. 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stats0039/zflame1uppertstat1 stats0040/zflame1uppertstat1 stats0041/zflame1uppertstat1 stats0042/zflame1uppertstat1 stats0043/zflame1uppertstat1 stats0044/zflame1uppertstat1 /usr/share/fsl/5.0/bin/fslmerge -z stats0000/zstat1.nii.gz stats0000/zstat1 stats0001/zstat1 stats0002/zstat1 stats0003/zstat1 stats0004/zstat1 stats0005/zstat1 stats0006/zstat1 stats0007/zstat1 stats0008/zstat1 stats0009/zstat1 stats0010/zstat1 stats0011/zstat1 stats0012/zstat1 stats0013/zstat1 stats0014/zstat1 stats0015/zstat1 stats0016/zstat1 stats0017/zstat1 stats0018/zstat1 stats0019/zstat1 stats0020/zstat1 stats0021/zstat1 stats0022/zstat1 stats0023/zstat1 stats0024/zstat1 stats0025/zstat1 stats0026/zstat1 stats0027/zstat1 stats0028/zstat1 stats0029/zstat1 stats0030/zstat1 stats0031/zstat1 stats0032/zstat1 stats0033/zstat1 stats0034/zstat1 stats0035/zstat1 stats0036/zstat1 stats0037/zstat1 stats0038/zstat1 stats0039/zstat1 stats0040/zstat1 stats0041/zstat1 stats0042/zstat1 stats0043/zstat1 stats0044/zstat1 /bin/mv stats0000 stats ; /bin/rm -rf stats?* tmp* /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats /usr/share/fsl/5.0/bin/smoothest -d 3 -m mask -r stats/res4d > stats/smoothness
/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1 echo 99569 > thresh_zstat1.vol zstat1: DLH=0.386841 VOLUME=99569 RESELS=13.1277 /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 1.64 -p 0.05 -d 0.386841 --volume=99569 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null 1.640304 3.437998 Rendering using zmin=1.640304 zmax=3.437998 /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 1.640304 3.437998 rendered_thresh_zstat1 /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif