Post-stats
/usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
echo 89021 > thresh_zstat1.vol
zstat1: DLH=0.47332 VOLUME=89021 RESELS=10.7292
/usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 1.64 -p 0.05 -d 0.47332 --volume=89021 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
/usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
/usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
1.640028 3.704232
Rendering using zmin=1.640028 zmax=3.704232
/usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 1.640028 3.704232 rendered_thresh_zstat1
/usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif