Browse Source

Final analysis setup and inputs

Michael Hanke 8 years ago
parent
commit
bafbad585c
4 changed files with 714 additions and 13 deletions
  1. 695 9
      code/1stlevel_design.fsf
  2. 17 2
      code/2ndlevel_design.fsf
  3. 1 1
      src/aligned
  4. 1 1
      src/tnt

+ 695 - 9
code/1stlevel_design.fsf

@@ -127,7 +127,7 @@ set fmri(melodic_yn) 0
 set fmri(stats_yn) 1
 
 # Carry out prewhitening?
-set fmri(prewhiten_yn) 1
+set fmri(prewhiten_yn) 0
 
 # Add motion parameters to model
 # 0 : No
@@ -152,8 +152,8 @@ set fmri(evs_real) 12
 set fmri(evs_vox) 0
 
 # Number of contrasts
-set fmri(ncon_orig) 10
-set fmri(ncon_real) 10
+set fmri(ncon_orig) 15
+set fmri(ncon_real) 15
 
 # Number of F-tests
 set fmri(nftests_orig) 0
@@ -267,15 +267,11 @@ set fmri(totalVoxels) 38638080
 set fmri(ncopeinputs) 0
 
 # 4D AVW data or FEAT directory (1)
-set feat_files(1) "/home/data/psyinf/forrest_gump/collection/visloc/src/aligned/###SUB###/in_bold3Tp2/###SUB###_task-objectcategories_###RUN###_bold"
+set feat_files(1) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/###RUN###_despiked_bold"
 
 # Add confound EVs text file
 set fmri(confoundevs) 0
 
-# Confound EVs text file for analysis 1
-#set confoundev_files(1) "/home/data/psyinf/forrest_gump/collection/visloc/src/aligned/###SUB###/in_bold3Tp2/###SUB###_task-objectcategories_###RUN###_bold_mcparams.txt"
-set confoundev_files(1) ""
-
 # EV 1 title
 set fmri(evtitle1) "bodies"
 
@@ -613,7 +609,7 @@ set fmri(con_mode_old) orig
 set fmri(con_mode) orig
 
 # Display images for contrast_real 1
-set fmri(conpic_real.1) 1
+set fmri(conpic_real.1) 0
 
 # Title for contrast_real 1
 set fmri(conname_real.1) "all"
@@ -1032,6 +1028,216 @@ set fmri(con_real10.11) -1.0
 # Real contrast_real vector 10 element 12
 set fmri(con_real10.12) 0
 
+# Display images for contrast_real 11
+set fmri(conpic_real.11) 1
+
+# Title for contrast_real 11
+set fmri(conname_real.11) "FFA_scr"
+
+# Real contrast_real vector 11 element 1
+set fmri(con_real11.1) 0
+
+# Real contrast_real vector 11 element 2
+set fmri(con_real11.2) 0
+
+# Real contrast_real vector 11 element 3
+set fmri(con_real11.3) 1.0
+
+# Real contrast_real vector 11 element 4
+set fmri(con_real11.4) 0
+
+# Real contrast_real vector 11 element 5
+set fmri(con_real11.5) 0
+
+# Real contrast_real vector 11 element 6
+set fmri(con_real11.6) 0
+
+# Real contrast_real vector 11 element 7
+set fmri(con_real11.7) 0
+
+# Real contrast_real vector 11 element 8
+set fmri(con_real11.8) 0
+
+# Real contrast_real vector 11 element 9
+set fmri(con_real11.9) 0
+
+# Real contrast_real vector 11 element 10
+set fmri(con_real11.10) 0
+
+# Real contrast_real vector 11 element 11
+set fmri(con_real11.11) -1.0
+
+# Real contrast_real vector 11 element 12
+set fmri(con_real11.12) 0
+
+# Display images for contrast_real 12
+set fmri(conpic_real.12) 1
+
+# Title for contrast_real 12
+set fmri(conname_real.12) "PPA_scr"
+
+# Real contrast_real vector 12 element 1
+set fmri(con_real12.1) 0
+
+# Real contrast_real vector 12 element 2
+set fmri(con_real12.2) 0
+
+# Real contrast_real vector 12 element 3
+set fmri(con_real12.3) 0
+
+# Real contrast_real vector 12 element 4
+set fmri(con_real12.4) 0
+
+# Real contrast_real vector 12 element 5
+set fmri(con_real12.5) 1.0
+
+# Real contrast_real vector 12 element 6
+set fmri(con_real12.6) 0
+
+# Real contrast_real vector 12 element 7
+set fmri(con_real12.7) 0
+
+# Real contrast_real vector 12 element 8
+set fmri(con_real12.8) 0
+
+# Real contrast_real vector 12 element 9
+set fmri(con_real12.9) 1.0
+
+# Real contrast_real vector 12 element 10
+set fmri(con_real12.10) 0
+
+# Real contrast_real vector 12 element 11
+set fmri(con_real12.11) -2.0
+
+# Real contrast_real vector 12 element 12
+set fmri(con_real12.12) 0
+
+# Display images for contrast_real 13
+set fmri(conpic_real.13) 1
+
+# Title for contrast_real 13
+set fmri(conname_real.13) "EBA_scr"
+
+# Real contrast_real vector 13 element 1
+set fmri(con_real13.1) 1.0
+
+# Real contrast_real vector 13 element 2
+set fmri(con_real13.2) 0
+
+# Real contrast_real vector 13 element 3
+set fmri(con_real13.3) 0
+
+# Real contrast_real vector 13 element 4
+set fmri(con_real13.4) 0
+
+# Real contrast_real vector 13 element 5
+set fmri(con_real13.5) 0
+
+# Real contrast_real vector 13 element 6
+set fmri(con_real13.6) 0
+
+# Real contrast_real vector 13 element 7
+set fmri(con_real13.7) 0
+
+# Real contrast_real vector 13 element 8
+set fmri(con_real13.8) 0
+
+# Real contrast_real vector 13 element 9
+set fmri(con_real13.9) 0
+
+# Real contrast_real vector 13 element 10
+set fmri(con_real13.10) 0
+
+# Real contrast_real vector 13 element 11
+set fmri(con_real13.11) -1.0
+
+# Real contrast_real vector 13 element 12
+set fmri(con_real13.12) 0
+
+# Display images for contrast_real 14
+set fmri(conpic_real.14) 1
+
+# Title for contrast_real 14
+set fmri(conname_real.14) "PPA_scralt1"
+
+# Real contrast_real vector 14 element 1
+set fmri(con_real14.1) 0
+
+# Real contrast_real vector 14 element 2
+set fmri(con_real14.2) 0
+
+# Real contrast_real vector 14 element 3
+set fmri(con_real14.3) 0
+
+# Real contrast_real vector 14 element 4
+set fmri(con_real14.4) 0
+
+# Real contrast_real vector 14 element 5
+set fmri(con_real14.5) 0
+
+# Real contrast_real vector 14 element 6
+set fmri(con_real14.6) 0
+
+# Real contrast_real vector 14 element 7
+set fmri(con_real14.7) 0
+
+# Real contrast_real vector 14 element 8
+set fmri(con_real14.8) 0
+
+# Real contrast_real vector 14 element 9
+set fmri(con_real14.9) 1.0
+
+# Real contrast_real vector 14 element 10
+set fmri(con_real14.10) 0
+
+# Real contrast_real vector 14 element 11
+set fmri(con_real14.11) -1.0
+
+# Real contrast_real vector 14 element 12
+set fmri(con_real14.12) 0
+
+# Display images for contrast_real 15
+set fmri(conpic_real.15) 1
+
+# Title for contrast_real 15
+set fmri(conname_real.15) "PPA_scralt2"
+
+# Real contrast_real vector 15 element 1
+set fmri(con_real15.1) 0
+
+# Real contrast_real vector 15 element 2
+set fmri(con_real15.2) 0
+
+# Real contrast_real vector 15 element 3
+set fmri(con_real15.3) 0
+
+# Real contrast_real vector 15 element 4
+set fmri(con_real15.4) 0
+
+# Real contrast_real vector 15 element 5
+set fmri(con_real15.5) 1.0
+
+# Real contrast_real vector 15 element 6
+set fmri(con_real15.6) 0
+
+# Real contrast_real vector 15 element 7
+set fmri(con_real15.7) 0
+
+# Real contrast_real vector 15 element 8
+set fmri(con_real15.8) 0
+
+# Real contrast_real vector 15 element 9
+set fmri(con_real15.9) 0
+
+# Real contrast_real vector 15 element 10
+set fmri(con_real15.10) 0
+
+# Real contrast_real vector 15 element 11
+set fmri(con_real15.11) -1.0
+
+# Real contrast_real vector 15 element 12
+set fmri(con_real15.12) 0
+
 # Display images for contrast_orig 1
 set fmri(conpic_orig.1) 0
 
@@ -1272,6 +1478,126 @@ set fmri(con_orig10.5) 0.0
 # Real contrast_orig vector 10 element 6
 set fmri(con_orig10.6) -1.0
 
+# Display images for contrast_orig 11
+set fmri(conpic_orig.11) 1
+
+# Title for contrast_orig 11
+set fmri(conname_orig.11) "FFA_scr"
+
+# Real contrast_orig vector 11 element 1
+set fmri(con_orig11.1) 0
+
+# Real contrast_orig vector 11 element 2
+set fmri(con_orig11.2) 1.0
+
+# Real contrast_orig vector 11 element 3
+set fmri(con_orig11.3) 0
+
+# Real contrast_orig vector 11 element 4
+set fmri(con_orig11.4) 0
+
+# Real contrast_orig vector 11 element 5
+set fmri(con_orig11.5) 0
+
+# Real contrast_orig vector 11 element 6
+set fmri(con_orig11.6) -1.0
+
+# Display images for contrast_orig 12
+set fmri(conpic_orig.12) 1
+
+# Title for contrast_orig 12
+set fmri(conname_orig.12) "PPA_scr"
+
+# Real contrast_orig vector 12 element 1
+set fmri(con_orig12.1) 0
+
+# Real contrast_orig vector 12 element 2
+set fmri(con_orig12.2) 0
+
+# Real contrast_orig vector 12 element 3
+set fmri(con_orig12.3) 1.0
+
+# Real contrast_orig vector 12 element 4
+set fmri(con_orig12.4) 0
+
+# Real contrast_orig vector 12 element 5
+set fmri(con_orig12.5) 1.0
+
+# Real contrast_orig vector 12 element 6
+set fmri(con_orig12.6) -2.0
+
+# Display images for contrast_orig 13
+set fmri(conpic_orig.13) 1
+
+# Title for contrast_orig 13
+set fmri(conname_orig.13) "EBA_scr"
+
+# Real contrast_orig vector 13 element 1
+set fmri(con_orig13.1) 1.0
+
+# Real contrast_orig vector 13 element 2
+set fmri(con_orig13.2) 0
+
+# Real contrast_orig vector 13 element 3
+set fmri(con_orig13.3) 0
+
+# Real contrast_orig vector 13 element 4
+set fmri(con_orig13.4) 0
+
+# Real contrast_orig vector 13 element 5
+set fmri(con_orig13.5) 0
+
+# Real contrast_orig vector 13 element 6
+set fmri(con_orig13.6) -1.0
+
+# Display images for contrast_orig 14
+set fmri(conpic_orig.14) 1
+
+# Title for contrast_orig 14
+set fmri(conname_orig.14) "PPA_scralt1"
+
+# Real contrast_orig vector 14 element 1
+set fmri(con_orig14.1) 0
+
+# Real contrast_orig vector 14 element 2
+set fmri(con_orig14.2) 0
+
+# Real contrast_orig vector 14 element 3
+set fmri(con_orig14.3) 0
+
+# Real contrast_orig vector 14 element 4
+set fmri(con_orig14.4) 0
+
+# Real contrast_orig vector 14 element 5
+set fmri(con_orig14.5) 1.0
+
+# Real contrast_orig vector 14 element 6
+set fmri(con_orig14.6) -1.0
+
+# Display images for contrast_orig 15
+set fmri(conpic_orig.15) 1
+
+# Title for contrast_orig 15
+set fmri(conname_orig.15) "PPA_scralt2"
+
+# Real contrast_orig vector 15 element 1
+set fmri(con_orig15.1) 0
+
+# Real contrast_orig vector 15 element 2
+set fmri(con_orig15.2) 0
+
+# Real contrast_orig vector 15 element 3
+set fmri(con_orig15.3) 1.0
+
+# Real contrast_orig vector 15 element 4
+set fmri(con_orig15.4) 0
+
+# Real contrast_orig vector 15 element 5
+set fmri(con_orig15.5) 0
+
+# Real contrast_orig vector 15 element 6
+set fmri(con_orig15.6) -1.0
+
 # Contrast masking - use >0 instead of thresholding?
 set fmri(conmask_zerothresh_yn) 0
 
@@ -1302,6 +1628,21 @@ set fmri(conmask1_9) 0
 # Mask real contrast/F-test 1 with real contrast/F-test 10?
 set fmri(conmask1_10) 0
 
+# Mask real contrast/F-test 1 with real contrast/F-test 11?
+set fmri(conmask1_11) 0
+
+# Mask real contrast/F-test 1 with real contrast/F-test 12?
+set fmri(conmask1_12) 0
+
+# Mask real contrast/F-test 1 with real contrast/F-test 13?
+set fmri(conmask1_13) 0
+
+# Mask real contrast/F-test 1 with real contrast/F-test 14?
+set fmri(conmask1_14) 0
+
+# Mask real contrast/F-test 1 with real contrast/F-test 15?
+set fmri(conmask1_15) 0
+
 # Mask real contrast/F-test 2 with real contrast/F-test 1?
 set fmri(conmask2_1) 0
 
@@ -1329,6 +1670,21 @@ set fmri(conmask2_9) 0
 # Mask real contrast/F-test 2 with real contrast/F-test 10?
 set fmri(conmask2_10) 0
 
+# Mask real contrast/F-test 2 with real contrast/F-test 11?
+set fmri(conmask2_11) 0
+
+# Mask real contrast/F-test 2 with real contrast/F-test 12?
+set fmri(conmask2_12) 0
+
+# Mask real contrast/F-test 2 with real contrast/F-test 13?
+set fmri(conmask2_13) 0
+
+# Mask real contrast/F-test 2 with real contrast/F-test 14?
+set fmri(conmask2_14) 0
+
+# Mask real contrast/F-test 2 with real contrast/F-test 15?
+set fmri(conmask2_15) 0
+
 # Mask real contrast/F-test 3 with real contrast/F-test 1?
 set fmri(conmask3_1) 0
 
@@ -1356,6 +1712,21 @@ set fmri(conmask3_9) 0
 # Mask real contrast/F-test 3 with real contrast/F-test 10?
 set fmri(conmask3_10) 0
 
+# Mask real contrast/F-test 3 with real contrast/F-test 11?
+set fmri(conmask3_11) 0
+
+# Mask real contrast/F-test 3 with real contrast/F-test 12?
+set fmri(conmask3_12) 0
+
+# Mask real contrast/F-test 3 with real contrast/F-test 13?
+set fmri(conmask3_13) 0
+
+# Mask real contrast/F-test 3 with real contrast/F-test 14?
+set fmri(conmask3_14) 0
+
+# Mask real contrast/F-test 3 with real contrast/F-test 15?
+set fmri(conmask3_15) 0
+
 # Mask real contrast/F-test 4 with real contrast/F-test 1?
 set fmri(conmask4_1) 0
 
@@ -1383,6 +1754,21 @@ set fmri(conmask4_9) 0
 # Mask real contrast/F-test 4 with real contrast/F-test 10?
 set fmri(conmask4_10) 0
 
+# Mask real contrast/F-test 4 with real contrast/F-test 11?
+set fmri(conmask4_11) 0
+
+# Mask real contrast/F-test 4 with real contrast/F-test 12?
+set fmri(conmask4_12) 0
+
+# Mask real contrast/F-test 4 with real contrast/F-test 13?
+set fmri(conmask4_13) 0
+
+# Mask real contrast/F-test 4 with real contrast/F-test 14?
+set fmri(conmask4_14) 0
+
+# Mask real contrast/F-test 4 with real contrast/F-test 15?
+set fmri(conmask4_15) 0
+
 # Mask real contrast/F-test 5 with real contrast/F-test 1?
 set fmri(conmask5_1) 0
 
@@ -1410,6 +1796,21 @@ set fmri(conmask5_9) 0
 # Mask real contrast/F-test 5 with real contrast/F-test 10?
 set fmri(conmask5_10) 0
 
+# Mask real contrast/F-test 5 with real contrast/F-test 11?
+set fmri(conmask5_11) 0
+
+# Mask real contrast/F-test 5 with real contrast/F-test 12?
+set fmri(conmask5_12) 0
+
+# Mask real contrast/F-test 5 with real contrast/F-test 13?
+set fmri(conmask5_13) 0
+
+# Mask real contrast/F-test 5 with real contrast/F-test 14?
+set fmri(conmask5_14) 0
+
+# Mask real contrast/F-test 5 with real contrast/F-test 15?
+set fmri(conmask5_15) 0
+
 # Mask real contrast/F-test 6 with real contrast/F-test 1?
 set fmri(conmask6_1) 0
 
@@ -1437,6 +1838,21 @@ set fmri(conmask6_9) 0
 # Mask real contrast/F-test 6 with real contrast/F-test 10?
 set fmri(conmask6_10) 0
 
+# Mask real contrast/F-test 6 with real contrast/F-test 11?
+set fmri(conmask6_11) 0
+
+# Mask real contrast/F-test 6 with real contrast/F-test 12?
+set fmri(conmask6_12) 0
+
+# Mask real contrast/F-test 6 with real contrast/F-test 13?
+set fmri(conmask6_13) 0
+
+# Mask real contrast/F-test 6 with real contrast/F-test 14?
+set fmri(conmask6_14) 0
+
+# Mask real contrast/F-test 6 with real contrast/F-test 15?
+set fmri(conmask6_15) 0
+
 # Mask real contrast/F-test 7 with real contrast/F-test 1?
 set fmri(conmask7_1) 0
 
@@ -1464,6 +1880,21 @@ set fmri(conmask7_9) 0
 # Mask real contrast/F-test 7 with real contrast/F-test 10?
 set fmri(conmask7_10) 0
 
+# Mask real contrast/F-test 7 with real contrast/F-test 11?
+set fmri(conmask7_11) 0
+
+# Mask real contrast/F-test 7 with real contrast/F-test 12?
+set fmri(conmask7_12) 0
+
+# Mask real contrast/F-test 7 with real contrast/F-test 13?
+set fmri(conmask7_13) 0
+
+# Mask real contrast/F-test 7 with real contrast/F-test 14?
+set fmri(conmask7_14) 0
+
+# Mask real contrast/F-test 7 with real contrast/F-test 15?
+set fmri(conmask7_15) 0
+
 # Mask real contrast/F-test 8 with real contrast/F-test 1?
 set fmri(conmask8_1) 0
 
@@ -1491,6 +1922,21 @@ set fmri(conmask8_9) 0
 # Mask real contrast/F-test 8 with real contrast/F-test 10?
 set fmri(conmask8_10) 0
 
+# Mask real contrast/F-test 8 with real contrast/F-test 11?
+set fmri(conmask8_11) 0
+
+# Mask real contrast/F-test 8 with real contrast/F-test 12?
+set fmri(conmask8_12) 0
+
+# Mask real contrast/F-test 8 with real contrast/F-test 13?
+set fmri(conmask8_13) 0
+
+# Mask real contrast/F-test 8 with real contrast/F-test 14?
+set fmri(conmask8_14) 0
+
+# Mask real contrast/F-test 8 with real contrast/F-test 15?
+set fmri(conmask8_15) 0
+
 # Mask real contrast/F-test 9 with real contrast/F-test 1?
 set fmri(conmask9_1) 0
 
@@ -1518,6 +1964,21 @@ set fmri(conmask9_8) 0
 # Mask real contrast/F-test 9 with real contrast/F-test 10?
 set fmri(conmask9_10) 0
 
+# Mask real contrast/F-test 9 with real contrast/F-test 11?
+set fmri(conmask9_11) 0
+
+# Mask real contrast/F-test 9 with real contrast/F-test 12?
+set fmri(conmask9_12) 0
+
+# Mask real contrast/F-test 9 with real contrast/F-test 13?
+set fmri(conmask9_13) 0
+
+# Mask real contrast/F-test 9 with real contrast/F-test 14?
+set fmri(conmask9_14) 0
+
+# Mask real contrast/F-test 9 with real contrast/F-test 15?
+set fmri(conmask9_15) 0
+
 # Mask real contrast/F-test 10 with real contrast/F-test 1?
 set fmri(conmask10_1) 0
 
@@ -1545,6 +2006,231 @@ set fmri(conmask10_8) 0
 # Mask real contrast/F-test 10 with real contrast/F-test 9?
 set fmri(conmask10_9) 0
 
+# Mask real contrast/F-test 10 with real contrast/F-test 11?
+set fmri(conmask10_11) 0
+
+# Mask real contrast/F-test 10 with real contrast/F-test 12?
+set fmri(conmask10_12) 0
+
+# Mask real contrast/F-test 10 with real contrast/F-test 13?
+set fmri(conmask10_13) 0
+
+# Mask real contrast/F-test 10 with real contrast/F-test 14?
+set fmri(conmask10_14) 0
+
+# Mask real contrast/F-test 10 with real contrast/F-test 15?
+set fmri(conmask10_15) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 1?
+set fmri(conmask11_1) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 2?
+set fmri(conmask11_2) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 3?
+set fmri(conmask11_3) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 4?
+set fmri(conmask11_4) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 5?
+set fmri(conmask11_5) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 6?
+set fmri(conmask11_6) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 7?
+set fmri(conmask11_7) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 8?
+set fmri(conmask11_8) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 9?
+set fmri(conmask11_9) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 10?
+set fmri(conmask11_10) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 12?
+set fmri(conmask11_12) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 13?
+set fmri(conmask11_13) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 14?
+set fmri(conmask11_14) 0
+
+# Mask real contrast/F-test 11 with real contrast/F-test 15?
+set fmri(conmask11_15) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 1?
+set fmri(conmask12_1) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 2?
+set fmri(conmask12_2) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 3?
+set fmri(conmask12_3) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 4?
+set fmri(conmask12_4) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 5?
+set fmri(conmask12_5) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 6?
+set fmri(conmask12_6) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 7?
+set fmri(conmask12_7) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 8?
+set fmri(conmask12_8) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 9?
+set fmri(conmask12_9) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 10?
+set fmri(conmask12_10) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 11?
+set fmri(conmask12_11) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 13?
+set fmri(conmask12_13) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 14?
+set fmri(conmask12_14) 0
+
+# Mask real contrast/F-test 12 with real contrast/F-test 15?
+set fmri(conmask12_15) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 1?
+set fmri(conmask13_1) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 2?
+set fmri(conmask13_2) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 3?
+set fmri(conmask13_3) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 4?
+set fmri(conmask13_4) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 5?
+set fmri(conmask13_5) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 6?
+set fmri(conmask13_6) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 7?
+set fmri(conmask13_7) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 8?
+set fmri(conmask13_8) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 9?
+set fmri(conmask13_9) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 10?
+set fmri(conmask13_10) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 11?
+set fmri(conmask13_11) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 12?
+set fmri(conmask13_12) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 14?
+set fmri(conmask13_14) 0
+
+# Mask real contrast/F-test 13 with real contrast/F-test 15?
+set fmri(conmask13_15) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 1?
+set fmri(conmask14_1) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 2?
+set fmri(conmask14_2) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 3?
+set fmri(conmask14_3) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 4?
+set fmri(conmask14_4) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 5?
+set fmri(conmask14_5) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 6?
+set fmri(conmask14_6) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 7?
+set fmri(conmask14_7) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 8?
+set fmri(conmask14_8) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 9?
+set fmri(conmask14_9) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 10?
+set fmri(conmask14_10) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 11?
+set fmri(conmask14_11) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 12?
+set fmri(conmask14_12) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 13?
+set fmri(conmask14_13) 0
+
+# Mask real contrast/F-test 14 with real contrast/F-test 15?
+set fmri(conmask14_15) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 1?
+set fmri(conmask15_1) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 2?
+set fmri(conmask15_2) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 3?
+set fmri(conmask15_3) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 4?
+set fmri(conmask15_4) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 5?
+set fmri(conmask15_5) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 6?
+set fmri(conmask15_6) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 7?
+set fmri(conmask15_7) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 8?
+set fmri(conmask15_8) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 9?
+set fmri(conmask15_9) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 10?
+set fmri(conmask15_10) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 11?
+set fmri(conmask15_11) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 12?
+set fmri(conmask15_12) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 13?
+set fmri(conmask15_13) 0
+
+# Mask real contrast/F-test 15 with real contrast/F-test 14?
+set fmri(conmask15_14) 0
+
 # Do contrast masking at all?
 set fmri(conmask1_1) 0
 

+ 17 - 2
code/2ndlevel_design.fsf

@@ -30,7 +30,7 @@ set fmri(featwatcher_yn) 0
 set fmri(sscleanup_yn) 0
 
 # Output directory
-set fmri(outputdir) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/2ndlvl_z164_nomc"
+set fmri(outputdir) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/2ndlvl"
 
 # TR(s)
 set fmri(tr) 3
@@ -260,7 +260,7 @@ set fmri(regstandard_nonlinear_warpres) 10
 set fmri(paradigm_hp) 100
 
 # Number of lower-level copes feeding into higher-level analysis
-set fmri(ncopeinputs) 10
+set fmri(ncopeinputs) 15
 
 # Use lower-level cope 1 for higher-level analysis
 set fmri(copeinput.1) 1
@@ -292,6 +292,21 @@ set fmri(copeinput.9) 1
 # Use lower-level cope 10 for higher-level analysis
 set fmri(copeinput.10) 1
 
+# Use lower-level cope 11 for higher-level analysis
+set fmri(copeinput.11) 1
+
+# Use lower-level cope 12 for higher-level analysis
+set fmri(copeinput.12) 1
+
+# Use lower-level cope 13 for higher-level analysis
+set fmri(copeinput.13) 1
+
+# Use lower-level cope 14 for higher-level analysis
+set fmri(copeinput.14) 1
+
+# Use lower-level cope 15 for higher-level analysis
+set fmri(copeinput.15) 1
+
 # 4D AVW data or FEAT directory (1)
 set feat_files(1) "/home/data/psyinf/forrest_gump/collection/visloc/###SUB###/run-1.feat"
 

+ 1 - 1
src/aligned

@@ -1 +1 @@
-Subproject commit 8bf66e5fd3a64f8add68c49079ace173f6d5bac2
+Subproject commit 046713bbeb2ae381685e1ffe31fb651024797693

+ 1 - 1
src/tnt

@@ -1 +1 @@
-Subproject commit fac413eaa891fa9c0629c98ad0331cdfdd19a9ba
+Subproject commit 08f9a2e82f0f546f578204842fe402e387dcd238