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aseg.stats

aseg.stats 9.5 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/5.3/ASegStatsLUT.txt --subject surface_3T 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname medusa
    8. 

  8. # machine  x86_64
    9. 

  9. # user     spark
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /home/data/exppsy/spark/Field_Strength_Comparison/data/sub001/anatomy
    13. 

  13. # subjectname surface_3T
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1198232.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1184960.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1184318.765013, mm^3
    17. 

  17. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 242777.740563, mm^3
    18. 

  18. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 245333.130228, mm^3
    19. 

  19. # Measure Cortex, CortexVol, Total cortical gray matter volume, 488110.870791, mm^3
    20. 

  20. # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left hemisphere cortical white matter volume, 249301.032407, mm^3
    21. 

  21. # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right hemisphere cortical white matter volume, 250322.861815, mm^3
    22. 

  22. # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical white matter volume, 499623.894222, mm^3
    23. 

  23. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64160.000000, mm^3
    24. 

  24. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 648454.870791, mm^3
    25. 

  25. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1064229.765013, mm^3
    26. 

  26. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1053174.765013, mm^3
    27. 

  27. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1052367.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1566392.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 1.103845, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.443005, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 14, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 15, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 29, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1085507.289288, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2014/06/20 15:59:58 
    37. 

  37. # ColorTable /opt/freesurfer/5.3/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2013/05/13 23:21:15 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2014/06/20 11:21:30 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2014/06/20 11:21:30 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      3522     3521.6  Left-Lateral-Ventricle            25.5283    16.6517     0.0000   109.0000   109.0000 
    81. 

  81.   2   5       406      405.9  Left-Inf-Lat-Vent                 31.5924    15.4280     2.0000    70.0000    68.0000 
    82. 

  82.   3   7     18142    18142.3  Left-Cerebellum-White-Matter      86.6238     7.5504    21.0000   114.0000    93.0000 
    83. 

  83.   4   8     48435    48435.1  Left-Cerebellum-Cortex            56.5190    10.3327     7.0000    98.0000    91.0000 
    84. 

  84.   5  10      7779     7778.9  Left-Thalamus-Proper              90.9412     9.7298    53.0000   117.0000    64.0000 
    85. 

  85.   6  11      4051     4051.5  Left-Caudate                      73.3343     9.3222    34.0000   109.0000    75.0000 
    86. 

  86.   7  12      6047     6047.2  Left-Putamen                      81.1655     8.2537    42.0000   109.0000    67.0000 
    87. 

  87.   8  13      1752     1752.2  Left-Pallidum                     98.1815     5.4872    71.0000   117.0000    46.0000 
    88. 

  88.   9  14       568      568.4  3rd-Ventricle                     36.6346    14.1343     7.0000    91.0000    84.0000 
    89. 

  89.  10  15       980      980.3  4th-Ventricle                     16.8701    12.4084     0.0000    81.0000    81.0000 
    90. 

  90.  11  16     24600    24599.9  Brain-Stem                        84.4752     9.5797     0.0000   118.0000   118.0000 
    91. 

  91.  12  17      4143     4142.8  Left-Hippocampus                  64.8100    10.1280    25.0000   117.0000    92.0000 
    92. 

  92.  13  18      1617     1617.4  Left-Amygdala                     63.2791     7.7718    38.0000    89.0000    51.0000 
    93. 

  93.  14  24       954      954.2  CSF                               35.3085    16.0598     1.0000    76.0000    75.0000 
    94. 

  94.  15  26       949      948.8  Left-Accumbens-area               65.0449     7.1414    41.0000    94.0000    53.0000 
    95. 

  95.  16  28      4792     4791.6  Left-VentralDC                    97.5375    11.1060    29.0000   122.0000    93.0000 
    96. 

  96.  17  30        60       59.8  Left-vessel                       64.7759    11.0724    43.0000    89.0000    46.0000 
    97. 

  97.  18  31      1324     1323.8  Left-choroid-plexus               56.2820    16.6753    16.0000   109.0000    93.0000 
    98. 

  98.  19  43      3110     3110.0  Right-Lateral-Ventricle           23.8730    15.3484     0.0000    82.0000    82.0000 
    99. 

  99.  20  44      1354     1353.7  Right-Inf-Lat-Vent                18.3618    17.2363     0.0000    79.0000    79.0000 
    100. 

  100.  21  46     18985    18985.1  Right-Cerebellum-White-Matter     86.6704     7.6477    11.0000   114.0000   103.0000 
    101. 

  101.  22  47     49712    49711.7  Right-Cerebellum-Cortex           55.4525    10.4936     0.0000    98.0000    98.0000 
    102. 

  102.  23  49      7513     7512.7  Right-Thalamus-Proper             89.1850    10.1177    38.0000   115.0000    77.0000 
    103. 

  103.  24  50      4381     4381.3  Right-Caudate                     71.3568     9.8981    31.0000   111.0000    80.0000 
    104. 

  104.  25  51      5742     5742.2  Right-Putamen                     81.0820     8.0678    49.0000   108.0000    59.0000 
    105. 

  105.  26  52      2058     2058.1  Right-Pallidum                    98.1404     5.2240    79.0000   120.0000    41.0000 
    106. 

  106.  27  53      4006     4006.5  Right-Hippocampus                 59.3218    10.2618    12.0000    99.0000    87.0000 
    107. 

  107.  28  54      2129     2129.1  Right-Amygdala                    63.7981     8.0665    27.0000    87.0000    60.0000 
    108. 

  108.  29  58       605      604.7  Right-Accumbens-area              68.5622     8.0525    54.0000   103.0000    49.0000 
    109. 

  109.  30  60      4794     4794.0  Right-VentralDC                   94.8961    12.1545    18.0000   122.0000   104.0000 
    110. 

  110.  31  62        76       76.3  Right-vessel                      63.5256    13.4712    24.0000    89.0000    65.0000 
    111. 

  111.  32  63      1612     1611.9  Right-choroid-plexus              53.6184    15.1570    13.0000   115.0000   102.0000 
    112. 

  112.  33  72         2        1.7  5th-Ventricle                     27.0000     0.0000    27.0000    27.0000     0.0000 
    113. 

  113.  34  77      1936     1935.9  WM-hypointensities                77.2057    14.9259    16.0000   118.0000   102.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80         8        8.2  non-WM-hypointensities            69.4000    12.2493    44.0000    90.0000    46.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       293      293.3  Optic-Chiasm                      66.4712    21.2242     8.0000   113.0000   105.0000 
    120. 

  120.  41 251      1191     1190.9  CC_Posterior                     113.2423     7.8147    52.0000   129.0000    77.0000 
    121. 

  121.  42 252       512      512.3  CC_Mid_Posterior                 105.6927    13.2295    29.0000   122.0000    93.0000 
    122. 

  122.  43 253       536      535.9  CC_Central                       107.4162     8.9078    58.0000   121.0000    63.0000 
    123. 

  123.  44 254       590      589.9  CC_Mid_Anterior                  107.7496     8.4857    76.0000   120.0000    44.0000 
    124. 

  124.  45 255      1039     1038.8  CC_Anterior                      107.7013     9.3665    45.0000   127.0000    82.0000 
    125.