cortical-surfaces-freesurfer/sub-20/mri/transforms/T2raw.dat.sum

$Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $
setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/scripts
mri_segreg --mov /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii --init-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat --out-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.mincost --dof 6 --nmax 36 --param /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat.param --surf white --cur-reg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 
sysname  Linux
hostname snake6
machine  x86_64
user     fkaule
movvol /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/template.nii
regfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/tmp.bbregister.19082/bbr.pass1.dat
subject sub020
dof 6
outregfile /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub020/mri/transforms/T2raw.dat
UseMask 0
UseLH 1
UseRH 1
nsubsamp 1
PenaltySign  -1
PenaltySlope 0.500000
PenaltyCenter 0.000000
surfname white
GMProjFrac 0.500000
WMProjAbs 2.000000
lhcostfile (null)
rhcostfile (null)
interp  trilinear (1)
frame  0
TolPowell 0.000000
nMaxItersPowell 36
n1dmin  3
Profile   0
Gdiag_no  -1
AddNoise  0 (0)
SynthSeed 1376035448
TransRandMax 0.000000
RotRandMax 0.000000
Translations 0.000000 0.000000 0.000000
Rotations   0.000000 0.000000 0.000000
Input reg
 0.998   0.049  -0.031  -0.138;
 0.035  -0.088   0.996   0.441;
 0.046  -0.995  -0.089   0.053;
 0.000   0.000   0.000   1.000;

Initial costs ----------------
Number of surface hits 255490
WM  Intensity0    51.9075 +/-   7.0033
Ctx Intensity0    63.3654 +/-   7.6848
Pct Contrast0     19.8445 +/-  13.5786
Cost   0.1290
RelCost   0.1281

Brute force preopt -0.1 0.1 0.1, n = 729
     0  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000  -0.1000      0.1259   0.1259  0.0
     3  -0.1000  -0.1000  -0.1000  -0.1000   0.0000  -0.1000      0.1220   0.1220  0.0
     9  -0.1000  -0.1000  -0.1000   0.0000  -0.1000  -0.1000      0.1209   0.1209  0.0
    12  -0.1000  -0.1000  -0.1000   0.0000   0.0000  -0.1000      0.1187   0.1187  0.0
    39  -0.1000  -0.1000   0.0000   0.0000   0.0000  -0.1000      0.1176   0.1176  0.0
   103  -0.1000   0.0000  -0.1000   0.1000   0.0000   0.0000      0.1175   0.1175  0.0
   120  -0.1000   0.0000   0.0000   0.0000   0.0000  -0.1000      0.1158   0.1158  0.0
   337   0.0000   0.0000  -0.1000   0.0000   0.0000   0.0000      0.1152   0.1152  0.0
   364   0.0000   0.0000   0.0000   0.0000   0.0000   0.0000      0.1126   0.1126  0.0

Final costs ----------------
Number of surface hits 255490
WM  Intensity0    51.9007 +/-   6.9972
Ctx Intensity0    63.3499 +/-   7.6561
Pct Contrast0     19.8367 +/-  13.5063
Cost   0.1255
RelCost   0.1281
Number of iterations     6
Min cost was 0.125533
RelMinCost   0.1246
Number of FunctionCalls   457
OptimizationTime 57.502000 sec
Parameters at optimum (transmm, rotdeg)
 0.13841 -0.00092 -0.06751  0.01267 -0.13233 -0.08668 
Number of surface hits 255490
WM  Intensity    51.9007 +/-   6.9972
Ctx Intensity    63.3499 +/-   7.6561
Pct Contrast     19.8367 +/-  13.5063
Cost at optimum   0.1255
RelCostOptimum   0.1246
nhits= 255490 wmmn=   51.9007 wmstd=  6.9972 constd=   13.5063 ctxmn=   63.3499 ctxstd=  7.6561 conmn =  19.8367 costmn =   0.1255 
#C#   0.138  -0.001  -0.068  0.013 -0.132 -0.087 0.000000 0.000000 0.125533 51.900686 63.349916 19.836661 0.000000 0.500000     1 0
Reg at min cost was 
 0.998   0.051  -0.029   0.001;
 0.033  -0.088   0.996   0.440;
 0.049  -0.995  -0.089  -0.015;
 0.000   0.000   0.000   1.000;

Original Reg - Optimal Reg
 0.000  -0.002  -0.002  -0.139;
 0.002  -0.000  -0.000   0.001;
-0.002  -0.000  -0.000   0.068;
 0.000   0.000   0.000   0.000;

Surface RMS Diff (mm) 0.196734 0.385326