Fri Aug  9 09:40:08 CEST 2013

setenv SUBJECTS_DIR /home/data/exppsy/forrest_gump/openfmri.org/freesurfer
cd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003
/opt/freesurfer/5.3.0/bin/wm-anat-snr --s sub003

subject sub003
/opt/freesurfer/5.3.0
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Linux medusa.ovgu.de 2.6.32-5-amd64 #1 SMP Sun Sep 23 10:07:46 UTC 2012 x86_64 GNU/Linux
$Id: wm-anat-snr,v 1.2 2011/01/21 23:11:47 greve Exp $
UpdateOnly 1
mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79

$Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
cwd /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003
cmdline mri_binarize --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/aparc+aseg.mgz --o /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh --erode 3 --match 2 41 7 46 251 252 253 254 255 77 78 79 
sysname  Linux
hostname medusa.ovgu.de
machine  x86_64
user     fkaule

input      /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/aparc+aseg.mgz
frame      0
nErode3d   3
nErode2d   0
output     /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh
Binarizing based on matching values
nMatch 12
 0     2
 1    41
 2     7
 3    46
 4   251
 5   252
 6   253
 7   254
 8   255
 9    77
10    78
11    79
binval        1
binvalnot     0
Found 403514 values in range
Eroding 3 voxels in 3d
Counting number of voxels
Found 28784 voxels in final mask
mri_binarize done
mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/norm.mgz --excludeid 0

$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd 
cmdline mri_segstats --snr --seg /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh --sum /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.sum --i /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/norm.mgz --excludeid 0 
sysname  Linux
hostname medusa.ovgu.de
machine  x86_64
user     fkaule
UseRobust  0
Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/tmp/wmeroded.mgh
Loading /home/data/exppsy/forrest_gump/openfmri.org/freesurfer/sub003/mri/norm.mgz
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found   2 segmentations
Computing statistics for each segmentation
  1     1                                      28784   28784.000

Reporting on   1 segmentations
mri_segstats done
sub003          16.63   107.31  6.45  28784   3
Fri Aug  9 09:40:28 CEST 2013
wm-anat-snr done