# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051292 # sysname Linux # hostname tars-544 # machine x86_64 # user ntraut # anatomy_type volume # # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0 # subjectname 0051292 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1055110.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1042292.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1041958.617180, mm^3 # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 10259.000000, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 233824.950674, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 240384.420621, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 474209.371295, mm^3 # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 177675.598552, mm^3 # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 179287.647333, mm^3 # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 356963.245886, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58759.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 658967.371295, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 902726.617180, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 892467.617180, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 890104.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1444296.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.767067, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.050006, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 54, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 47, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 101, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1375511.828487, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2017/10/08 07:42:34 # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt # ColorTableTimeStamp 2017/01/18 23:00:02 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2017/10/07 23:55:10 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2017/10/07 23:55:10 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 4522 4855.8 Left-Lateral-Ventricle 21.1594 14.7592 0.0000 78.0000 78.0000 2 5 253 292.3 Left-Inf-Lat-Vent 44.0158 12.7136 16.0000 81.0000 65.0000 3 7 13291 13681.8 Left-Cerebellum-White-Matter 82.8018 6.9326 27.0000 107.0000 80.0000 4 8 63026 63501.0 Left-Cerebellum-Cortex 55.6506 9.6944 9.0000 95.0000 86.0000 5 10 7924 7578.6 Left-Thalamus-Proper 77.8676 10.8041 32.0000 103.0000 71.0000 6 11 3394 3324.7 Left-Caudate 65.8701 9.3623 32.0000 95.0000 63.0000 7 12 5008 4911.6 Left-Putamen 73.4469 7.2573 44.0000 99.0000 55.0000 8 13 1975 1933.6 Left-Pallidum 92.2557 5.4591 71.0000 113.0000 42.0000 9 14 579 702.3 3rd-Ventricle 34.5009 14.9766 0.0000 70.0000 70.0000 10 15 1304 1417.4 4th-Ventricle 18.7170 11.9781 0.0000 65.0000 65.0000 11 16 20896 21163.3 Brain-Stem 78.3368 10.1051 20.0000 119.0000 99.0000 12 17 4524 4305.4 Left-Hippocampus 58.0632 8.6857 21.0000 91.0000 70.0000 13 18 1883 1808.0 Left-Amygdala 57.0350 7.8460 20.0000 89.0000 69.0000 14 24 676 738.5 CSF 34.2219 13.2958 1.0000 65.0000 64.0000 15 26 508 504.1 Left-Accumbens-area 63.3740 5.7897 34.0000 79.0000 45.0000 16 28 4290 4166.6 Left-VentralDC 84.7995 10.9924 36.0000 116.0000 80.0000 17 30 28 45.1 Left-vessel 51.7500 9.8493 36.0000 73.0000 37.0000 18 31 543 464.6 Left-choroid-plexus 45.2910 13.4628 5.0000 87.0000 82.0000 19 43 4116 4432.5 Right-Lateral-Ventricle 21.5935 15.8725 0.0000 82.0000 82.0000 20 44 198 227.9 Right-Inf-Lat-Vent 43.0606 11.0544 17.0000 73.0000 56.0000 21 46 12701 13080.4 Right-Cerebellum-White-Matter 78.2230 6.8083 30.0000 98.0000 68.0000 22 47 61788 62293.0 Right-Cerebellum-Cortex 52.8691 9.1352 4.0000 100.0000 96.0000 23 49 7520 7157.8 Right-Thalamus-Proper 78.9697 10.6340 33.0000 105.0000 72.0000 24 50 3679 3634.5 Right-Caudate 66.2207 9.2895 31.0000 92.0000 61.0000 25 51 5130 5021.8 Right-Putamen 72.1419 7.4147 48.0000 100.0000 52.0000 26 52 1824 1759.8 Right-Pallidum 91.2198 5.4452 53.0000 108.0000 55.0000 27 53 4399 4239.0 Right-Hippocampus 58.4431 8.3455 17.0000 96.0000 79.0000 28 54 1866 1790.9 Right-Amygdala 55.3081 7.0963 33.0000 76.0000 43.0000 29 58 573 532.6 Right-Accumbens-area 63.2112 7.0308 34.0000 83.0000 49.0000 30 60 4326 4145.2 Right-VentralDC 85.1708 11.6651 34.0000 117.0000 83.0000 31 62 8 9.7 Right-vessel 58.2500 8.0134 47.0000 68.0000 21.0000 32 63 627 500.2 Right-choroid-plexus 44.3381 14.1728 12.0000 76.0000 64.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 1417 1172.8 WM-hypointensities 68.8800 12.7075 30.0000 100.0000 70.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 203 201.7 Optic-Chiasm 72.2956 14.6024 37.0000 109.0000 72.0000 41 251 965 917.7 CC_Posterior 99.1534 13.8499 26.0000 119.0000 93.0000 42 252 622 562.4 CC_Mid_Posterior 86.6125 17.9735 20.0000 113.0000 93.0000 43 253 619 565.1 CC_Central 93.5105 17.7225 42.0000 121.0000 79.0000 44 254 480 432.2 CC_Mid_Anterior 98.7292 20.2341 41.0000 128.0000 87.0000 45 255 907 828.2 CC_Anterior 101.7332 19.8314 38.0000 131.0000 93.0000