all: prepare_folder_structure extract_stimulations assign_protocols filter analyse_firing_rates analyse_persistent_activity plot_firing_rates plot_traces report

prepare_folder_structure:
	python scripts/check_folder_structure.py

extract_stimulations: prepare_folder_structure
	python scripts/extract_stimulations.py

assign_protocols: prepare_folder_structure
	python scripts/extract_protocols.py

filter: prepare_folder_structure
	python scripts/filter_stimulations.py

analyse_firing_rates: prepare_folder_structure
	python analyse_firing_rates.py

analyse_persistent_activity: prepare_folder_structure
	python analyse_persistent_activity.py

plot_firing_rates: prepare_folder_structure
	python plot_traces.py

plot_traces: prepare_folder_structure
	python plot_traces.py

report: prepare_folder_structure
	python generate_report.py

clean:
	rm -r out/