authors: - firstname: Niklas lastname: Pallast affiliation: 'University Hospital Cologne, Department of Neurology, Cologne, Germany ' id: niklas.pallast@uk-koeln.de - firstname: Michael lastname: Diedenhofen affiliation: 'Max Planck Institute for Metabolism Research, In-vivo-NMR Laboratory, Cologne, Germany ' - firstname: Stefan lastname: Blaschke affiliation: 'University Hospital Cologne, Department of Neurology, Cologne, Germany ' - firstname: Frederique lastname: Wieters affiliation: 'University Hospital Cologne, Department of Neurology, Cologne, Germany ' - firstname: Dirk lastname: Wiedermann affiliation: 'Max Planck Institute for Metabolism Research, In-vivo-NMR Laboratory, Cologne, Germany ' - firstname: Mathias lastname: Hoehn affiliation: 'Max Planck Institute for Metabolism Research, In-vivo-NMR Laboratory, Cologne, Germany ' - firstname: Gereon R. lastname: Fink affiliation: 'University Hospital Cologne, Department of Neurology, Cologne, Germany ' - firstname: Markus lastname: Aswendt affiliation: 'University Hospital Cologne, Department of Neurology, Cologne, Germany ' id: markus.aswendt@uk-koeln.de title: 'Processing pipeline for Atlas-based Imaging Data Analysis of structural and functional mouse brain MRI (AIDAmri)' description: 'Here, we describe a novel Atlas-based Imaging Data Analysis Pipeline (AIDAmri) for structural and functional MRI of the mouse brain. AIDA associates pre-clinical raw data to the Allen Brain Reference Atlas, thereby providing an efficient and highly accurate atlas-based analysis and prepare atlas-based processing of structural and functional MRI data of the mouse brain. ' keywords: - 'Processing Pipeline' - 'Mouse Atlas Registration' license: name: 'GNU General Public License v3.0' url: 'https://www.gnu.org/licenses/gpl-3.0.en.html' funding: - 'Friebe-Stiftung, T0498/28960/16' dtype: Dataset