# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-10 # sysname Linux # hostname nid00784 # machine x86_64 # user oesteban # anatomy_type volume # # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1 # subjectname sub-10 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 913214.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 892245.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 891879.294712, mm^3 # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 18026.000000, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 177989.014851, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 176358.218806, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 354347.233658, mm^3 # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 193066.957826, mm^3 # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 190428.103228, mm^3 # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 383495.061054, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 42543.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 486330.233658, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 799572.294712, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 781546.294712, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 780687.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1180661.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.775363, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.002438, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 6, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 16, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1177789.072125, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2019/10/16 20:34:36 # ColorTable /opt/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2017/10/20 18:17:30 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2019/10/16 17:26:08 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2019/10/16 17:26:08 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 8805 9060.3 Left-Lateral-Ventricle 13.7735 12.7417 0.0000 82.0000 82.0000 2 5 271 271.6 Left-Inf-Lat-Vent 38.1734 13.9797 4.0000 72.0000 68.0000 3 7 11437 12083.0 Left-Cerebellum-White-Matter 82.5046 7.0432 21.0000 102.0000 81.0000 4 8 44852 45202.8 Left-Cerebellum-Cortex 52.7223 9.3388 4.0000 85.0000 81.0000 5 10 5434 5162.1 Left-Thalamus-Proper 74.3174 11.5305 22.0000 103.0000 81.0000 6 11 2569 2513.5 Left-Caudate 61.8856 10.4793 23.0000 88.0000 65.0000 7 12 4069 4043.8 Left-Putamen 72.0504 8.5967 46.0000 99.0000 53.0000 8 13 1419 1379.0 Left-Pallidum 95.9302 5.5827 74.0000 110.0000 36.0000 9 14 708 748.0 3rd-Ventricle 24.2924 14.8804 1.0000 74.0000 73.0000 10 15 1459 1527.4 4th-Ventricle 16.6655 12.9713 0.0000 66.0000 66.0000 11 16 17994 18279.8 Brain-Stem 74.3347 10.1667 6.0000 108.0000 102.0000 12 17 3230 3112.7 Left-Hippocampus 49.9855 9.4003 6.0000 87.0000 81.0000 13 18 1041 995.4 Left-Amygdala 52.9452 7.9096 25.0000 76.0000 51.0000 14 24 776 796.6 CSF 25.9330 13.4100 1.0000 57.0000 56.0000 15 26 553 518.3 Left-Accumbens-area 55.2260 7.3656 30.0000 81.0000 51.0000 16 28 2932 2810.4 Left-VentralDC 85.0171 11.7868 14.0000 113.0000 99.0000 17 30 12 18.6 Left-vessel 55.5000 6.4031 44.0000 67.0000 23.0000 18 31 608 536.1 Left-choroid-plexus 48.9507 14.3169 14.0000 87.0000 73.0000 19 43 7512 7772.4 Right-Lateral-Ventricle 14.9975 13.3024 0.0000 75.0000 75.0000 20 44 306 327.7 Right-Inf-Lat-Vent 26.6307 14.1846 4.0000 74.0000 70.0000 21 46 10599 11312.1 Right-Cerebellum-White-Matter 84.5195 6.6774 34.0000 102.0000 68.0000 22 47 44504 44928.9 Right-Cerebellum-Cortex 52.7954 9.9089 4.0000 91.0000 87.0000 23 49 5575 5268.3 Right-Thalamus-Proper 73.7690 11.5301 22.0000 102.0000 80.0000 24 50 2640 2558.5 Right-Caudate 58.2152 11.0853 22.0000 87.0000 65.0000 25 51 4163 4074.5 Right-Putamen 72.5986 8.7950 47.0000 94.0000 47.0000 26 52 1321 1281.6 Right-Pallidum 96.4186 5.1224 63.0000 109.0000 46.0000 27 53 3241 3130.2 Right-Hippocampus 52.0873 9.5398 10.0000 85.0000 75.0000 28 54 1017 976.7 Right-Amygdala 51.7060 8.3297 23.0000 81.0000 58.0000 29 58 452 416.9 Right-Accumbens-area 56.1372 7.7430 34.0000 79.0000 45.0000 30 60 2923 2756.2 Right-VentralDC 83.5036 12.6238 38.0000 111.0000 73.0000 31 62 6 12.2 Right-vessel 54.0000 5.6214 47.0000 62.0000 15.0000 32 63 524 444.3 Right-choroid-plexus 45.5916 14.1637 14.0000 87.0000 73.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 1513 1232.9 WM-hypointensities 65.5882 12.9788 30.0000 96.0000 66.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 88 103.1 Optic-Chiasm 59.6477 18.5404 12.0000 105.0000 93.0000 41 251 1021 959.9 CC_Posterior 98.4740 15.5675 38.0000 117.0000 79.0000 42 252 625 565.0 CC_Mid_Posterior 84.6800 21.3728 20.0000 114.0000 94.0000 43 253 465 441.8 CC_Central 94.3957 17.0670 40.0000 114.0000 74.0000 44 254 538 490.5 CC_Mid_Anterior 92.9814 17.4201 31.0000 114.0000 83.0000 45 255 767 772.4 CC_Anterior 102.3116 11.7754 32.0000 117.0000 85.0000