Sat Jul 25 00:17:35 PDT 2020
FREESURFER_HOME /opt/freesurfer
Actual FREESURFER_HOME /opt/freesurfer
/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-09
setenv SUBJECTS_DIR /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1
-autorecon3 -openmp 8 -subjid sub-09 -sd /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1 -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels
Linux sh02-05n27.int 3.10.0-957.27.2.el7.x86_64 #1 SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux

cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    4194304 kbytes
vmemoryuse   unlimited
descriptors  131072 
memorylocked unlimited
maxproc      4096 
maxlocks     unlimited
maxsignal    1030588 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

TEMPLATEFLOW_HOME=/home/users/oesteban/.cache/templateflow
POSSUMDIR=/usr/share/fsl/5.0
AFNI_TTATLAS_DATASET=/usr/share/afni/atlases
AFNI_PLUGINPATH=/usr/lib/afni/plugins
MKL_THREADING_LAYER=INTEL
LD_LIBRARY_PATH=/usr/lib/fsl/5.0::/.singularity.d/libs
HOME=/home/users/oesteban
OLDPWD=/home/users/oesteban/fmriprep/ds000114
PS1=Singularity> 
MINC_LIB_DIR=/opt/freesurfer/mni/lib
FS_LICENSE=/home/users/oesteban/.freesurfer.txt
FREESURFER_HOME=/opt/freesurfer
MINC_BIN_DIR=/opt/freesurfer/mni/bin
FSLDIR=/usr/share/fsl/5.0
AFNI_IMSAVE_WARNINGS=NO
PYTHONNOUSERSITE=1
ANTSPATH=/usr/lib/ants
FUNCTIONALS_DIR=/opt/freesurfer/sessions
FSLMULTIFILEQUIT=TRUE
FSLTCLSH=/usr/bin/tclsh
NO_ET=1
ANTS_RANDOM_SEED=47970
TERM=xterm-256color
PATH=/usr/local/miniconda/bin:/opt/ICA-AROMA:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
OS=Linux
PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5
MNI_DIR=/opt/freesurfer/mni
FSLOUTPUTTYPE=NIFTI_GZ
KMP_INIT_AT_FORK=FALSE
LANG=C
MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5
AFNI_MODELPATH=/usr/lib/afni/models
LOCAL_DIR=/opt/freesurfer/local
AROMA_VERSION=0.4.5
FS_OVERRIDE=0
FSLWISH=/usr/bin/wish
IS_DOCKER_8395080871=1
SINGULARITY_APPNAME=
PROMPT_COMMAND=PS1="Singularity> "; unset PROMPT_COMMAND
FSL_DIR=/usr/share/fsl/5.0
FSF_OUTPUT_FORMAT=nii.gz
SINGULARITY_CONTAINER=/home/groups/russpold/singularity_images/poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg
MNI_DATAPATH=/opt/freesurfer/mni/data
PWD=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-09
LC_ALL=C.UTF-8
NIPYPE_NO_ET=1
SUBJECTS_DIR=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1
MKL_NUM_THREADS=1
OMP_NUM_THREADS=8
SINGULARITY_NAME=poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg
CPATH=/usr/local/miniconda/include/:
FIX_VERTEX_AREA=
HOSTTYPE=x86_64-linux
VENDOR=unknown
OSTYPE=linux
MACHTYPE=x86_64
SHLVL=1
LOGNAME=oesteban
USER=oesteban
GROUP=russpold
HOST=sh02-05n27.int
ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
FS_OMP_NUM_THREADS=8
REQUIRE_FS_MATCH=0