/corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-09/mri
/opt/freesurfer/bin/mri_nu_correct.mni
--no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
nIters 1
$Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
Linux nid00784 4.4.103-6.38_4.0.95-cray_ari_c #1 SMP Fri Feb 9 17:52:44 UTC 2018 (172b90b) x86_64 x86_64 x86_64 GNU/Linux
Wed Oct 16 15:51:39 UTC 2019
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
tmpdir is ./tmp.mri_nu_correct.mni.28594
/corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-09/mri
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.28594/nu0.mnc -odt float
mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.28594/nu0.mnc -odt float 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from orig.mgz...
TR=9.68, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 6.98492e-10, 3.72529e-09)
j_ras = (3.72529e-09, 1.49012e-08, -1)
k_ras = (6.98492e-10, 1, 0)
changing data type from uchar to float (noscale = 0)...
writing to ./tmp.mri_nu_correct.mni.28594/nu0.mnc...
 
--------------------------------------------------------
Iteration 1 Wed Oct 16 15:51:41 UTC 2019
nu_correct -clobber ./tmp.mri_nu_correct.mni.28594/nu0.mnc ./tmp.mri_nu_correct.mni.28594/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.28594/0/ -iterations 1000 -distance 50
[oesteban@nid00784:/corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1/sub-09/mri/] [2019-10-16 15:51:41] running:
  /opt/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.28594/0/ ./tmp.mri_nu_correct.mni.28594/nu0.mnc ./tmp.mri_nu_correct.mni.28594/nu1.imp

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Number of iterations: 31 
CV of field change: 0.00098941
 
 
 
mri_convert ./tmp.mri_nu_correct.mni.28594/nu1.mnc orig_nu.mgz --like orig.mgz --conform
mri_convert.bin ./tmp.mri_nu_correct.mni.28594/nu1.mnc orig_nu.mgz --like orig.mgz --conform 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from ./tmp.mri_nu_correct.mni.28594/nu1.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 6.98492e-10, 3.72529e-09)
j_ras = (3.72529e-09, 1.49012e-08, -1)
k_ras = (6.98492e-10, 1, 0)
INFO: transform src into the like-volume: orig.mgz
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram 
writing to orig_nu.mgz...
 
 
Wed Oct 16 15:52:33 UTC 2019
mri_nu_correct.mni done