# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-03 # sysname Linux # hostname nid00781 # machine x86_64 # user oesteban # anatomy_type volume # # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1 # subjectname sub-03 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 978519.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 961333.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 961398.239580, mm^3 # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 13208.000000, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 187581.593120, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 184998.843834, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 372580.436953, mm^3 # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 218123.400008, mm^3 # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216598.402618, mm^3 # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 434721.802626, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 46532.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 505676.436953, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 868349.239580, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 855141.239580, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 853902.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1278024.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.745935, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.974251, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 14, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 9, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 23, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1311801.331287, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2019/10/16 21:10:09 # ColorTable /opt/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2017/10/20 18:17:30 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2019/10/16 17:26:31 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2019/10/16 17:26:31 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 5497 5769.2 Left-Lateral-Ventricle 16.9831 14.4861 0.0000 81.0000 81.0000 2 5 504 546.6 Left-Inf-Lat-Vent 30.2242 15.3279 2.0000 83.0000 81.0000 3 7 10379 11013.5 Left-Cerebellum-White-Matter 84.9183 7.5415 27.0000 105.0000 78.0000 4 8 42796 43241.1 Left-Cerebellum-Cortex 51.3195 10.5730 2.0000 88.0000 86.0000 5 10 5595 5351.1 Left-Thalamus-Proper 73.5857 11.2566 26.0000 103.0000 77.0000 6 11 2587 2532.0 Left-Caudate 58.4391 9.5026 25.0000 88.0000 63.0000 7 12 4354 4339.1 Left-Putamen 67.2435 8.5736 25.0000 90.0000 65.0000 8 13 1598 1512.4 Left-Pallidum 91.0851 5.9293 62.0000 105.0000 43.0000 9 14 1168 1176.6 3rd-Ventricle 19.9264 15.9532 0.0000 72.0000 72.0000 10 15 1888 1996.1 4th-Ventricle 13.8994 12.5308 0.0000 67.0000 67.0000 11 16 17204 17628.9 Brain-Stem 77.8391 12.0851 4.0000 116.0000 112.0000 12 17 3684 3568.6 Left-Hippocampus 49.9772 9.2190 15.0000 93.0000 78.0000 13 18 1230 1173.0 Left-Amygdala 50.1260 9.0968 21.0000 81.0000 60.0000 14 24 922 919.2 CSF 22.2755 14.5779 0.0000 66.0000 66.0000 15 26 575 573.2 Left-Accumbens-area 54.3426 6.2741 33.0000 75.0000 42.0000 16 28 3324 3255.4 Left-VentralDC 85.4519 13.0605 32.0000 114.0000 82.0000 17 30 243 235.5 Left-vessel 30.9177 19.1666 0.0000 71.0000 71.0000 18 31 349 284.4 Left-choroid-plexus 45.4785 14.3426 7.0000 79.0000 72.0000 19 43 5917 6271.8 Right-Lateral-Ventricle 15.2123 13.8649 0.0000 81.0000 81.0000 20 44 384 447.9 Right-Inf-Lat-Vent 31.8411 12.3497 5.0000 71.0000 66.0000 21 46 10365 10992.3 Right-Cerebellum-White-Matter 82.2679 7.2705 23.0000 98.0000 75.0000 22 47 43688 44145.9 Right-Cerebellum-Cortex 48.7478 10.4454 2.0000 82.0000 80.0000 23 49 5480 5235.4 Right-Thalamus-Proper 75.5250 11.5911 20.0000 105.0000 85.0000 24 50 2961 2920.6 Right-Caudate 59.4374 10.2181 23.0000 90.0000 67.0000 25 51 4239 4293.4 Right-Putamen 68.3961 8.7214 18.0000 92.0000 74.0000 26 52 1652 1545.1 Right-Pallidum 92.8015 6.4520 51.0000 108.0000 57.0000 27 53 4029 3857.5 Right-Hippocampus 50.6580 9.4466 13.0000 89.0000 76.0000 28 54 1325 1256.2 Right-Amygdala 52.7525 8.4168 8.0000 74.0000 66.0000 29 58 662 643.8 Right-Accumbens-area 57.9713 6.9533 37.0000 78.0000 41.0000 30 60 3282 3174.0 Right-VentralDC 85.6581 14.1179 32.0000 119.0000 87.0000 31 62 13 15.4 Right-vessel 45.4615 18.4509 14.0000 71.0000 57.0000 32 63 557 477.0 Right-choroid-plexus 48.2406 14.4471 10.0000 81.0000 71.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 1568 1355.9 WM-hypointensities 66.2659 12.6671 30.0000 96.0000 66.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 126 153.3 Optic-Chiasm 69.8810 18.2176 24.0000 110.0000 86.0000 41 251 878 823.2 CC_Posterior 101.1401 15.7628 40.0000 119.0000 79.0000 42 252 501 436.5 CC_Mid_Posterior 89.8483 22.5947 17.0000 121.0000 104.0000 43 253 449 409.4 CC_Central 90.7171 18.4629 29.0000 114.0000 85.0000 44 254 480 452.9 CC_Mid_Anterior 94.8083 16.4557 40.0000 113.0000 73.0000 45 255 824 781.4 CC_Anterior 99.3774 15.0412 31.0000 116.0000 85.0000