# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-09 # sysname Linux # hostname nid00785 # machine x86_64 # user oesteban # anatomy_type volume # # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1 # subjectname sub-09 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1200946.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1172429.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1172327.492711, mm^3 # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 25285.000000, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 229399.031890, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 229061.399518, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 458460.431408, mm^3 # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 265597.092694, mm^3 # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 263604.968609, mm^3 # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 529202.061302, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 53039.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 614205.431408, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1067230.492711, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1041945.492711, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1040726.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1538303.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.759652, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.973045, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 8, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 4, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 12, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1580916.660390, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2019/10/16 21:17:55 # ColorTable /opt/freesurfer/ASegStatsLUT.txt # ColorTableTimeStamp 2017/10/20 18:17:30 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2019/10/16 17:25:15 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2019/10/16 17:25:15 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 12596 12917.9 Left-Lateral-Ventricle 12.8615 12.1437 0.0000 83.0000 83.0000 2 5 606 662.7 Left-Inf-Lat-Vent 30.9208 14.4699 5.0000 72.0000 67.0000 3 7 14474 15130.9 Left-Cerebellum-White-Matter 80.8563 7.2728 37.0000 98.0000 61.0000 4 8 51086 51288.4 Left-Cerebellum-Cortex 48.7794 10.3152 3.0000 91.0000 88.0000 5 10 7126 6822.1 Left-Thalamus-Proper 75.5766 11.9459 23.0000 104.0000 81.0000 6 11 3518 3486.5 Left-Caudate 62.9383 10.1337 26.0000 91.0000 65.0000 7 12 4705 4549.2 Left-Putamen 73.8264 9.5805 49.0000 101.0000 52.0000 8 13 2094 2064.5 Left-Pallidum 99.0325 5.4820 65.0000 116.0000 51.0000 9 14 1101 1137.6 3rd-Ventricle 20.9564 14.5655 0.0000 63.0000 63.0000 10 15 1028 1091.5 4th-Ventricle 19.0827 12.8256 0.0000 67.0000 67.0000 11 16 20923 21440.6 Brain-Stem 72.0908 9.6997 9.0000 105.0000 96.0000 12 17 3944 3728.5 Left-Hippocampus 50.6985 10.1501 7.0000 91.0000 84.0000 13 18 1160 1112.4 Left-Amygdala 51.1310 7.8581 23.0000 77.0000 54.0000 14 24 1103 1086.4 CSF 23.8422 15.0442 0.0000 93.0000 93.0000 15 26 634 647.5 Left-Accumbens-area 57.7760 6.2249 39.0000 79.0000 40.0000 16 28 3524 3381.8 Left-VentralDC 84.5582 12.0879 35.0000 109.0000 74.0000 17 30 10 19.4 Left-vessel 55.7000 5.5187 47.0000 62.0000 15.0000 18 31 553 463.0 Left-choroid-plexus 41.7016 13.7446 12.0000 76.0000 64.0000 19 43 10710 11065.1 Right-Lateral-Ventricle 12.9570 12.5706 0.0000 82.0000 82.0000 20 44 269 307.5 Right-Inf-Lat-Vent 38.3941 12.8612 7.0000 79.0000 72.0000 21 46 14402 15093.1 Right-Cerebellum-White-Matter 81.6344 7.2448 32.0000 99.0000 67.0000 22 47 51411 51549.1 Right-Cerebellum-Cortex 49.7153 10.4539 0.0000 86.0000 86.0000 23 49 6989 6706.2 Right-Thalamus-Proper 76.4539 12.1419 15.0000 110.0000 95.0000 24 50 3546 3498.7 Right-Caudate 62.3813 10.8477 26.0000 93.0000 67.0000 25 51 4508 4455.8 Right-Putamen 75.2518 9.4910 21.0000 102.0000 81.0000 26 52 2155 2086.4 Right-Pallidum 100.0455 7.0708 41.0000 115.0000 74.0000 27 53 3805 3723.2 Right-Hippocampus 52.7698 9.3297 11.0000 83.0000 72.0000 28 54 1325 1290.4 Right-Amygdala 51.4287 7.7478 22.0000 75.0000 53.0000 29 58 572 575.8 Right-Accumbens-area 58.0839 7.3934 37.0000 82.0000 45.0000 30 60 3486 3336.8 Right-VentralDC 84.7840 12.7079 14.0000 109.0000 95.0000 31 62 34 52.1 Right-vessel 48.5588 11.0815 25.0000 68.0000 43.0000 32 63 551 476.1 Right-choroid-plexus 42.6007 13.8369 15.0000 77.0000 62.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 2366 2086.1 WM-hypointensities 65.3136 13.1600 33.0000 103.0000 70.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 122 152.6 Optic-Chiasm 61.3689 15.3979 23.0000 102.0000 79.0000 41 251 1183 1107.9 CC_Posterior 101.2773 16.9452 23.0000 119.0000 96.0000 42 252 537 469.6 CC_Mid_Posterior 88.5382 20.3886 18.0000 112.0000 94.0000 43 253 510 490.9 CC_Central 95.8314 16.6564 41.0000 114.0000 73.0000 44 254 530 500.8 CC_Mid_Anterior 95.7924 16.8953 40.0000 114.0000 74.0000 45 255 1163 1128.3 CC_Anterior 99.6543 15.9090 33.0000 120.0000 87.0000