Sat Jul 25 00:17:35 PDT 2020 FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-09 setenv SUBJECTS_DIR /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1 -autorecon3 -openmp 8 -subjid sub-09 -sd /oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1 -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels Linux sh02-05n27.int 3.10.0-957.27.2.el7.x86_64 #1 SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse 4194304 kbytes vmemoryuse unlimited descriptors 131072 memorylocked unlimited maxproc 4096 maxlocks unlimited maxsignal 1030588 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited TEMPLATEFLOW_HOME=/home/users/oesteban/.cache/templateflow POSSUMDIR=/usr/share/fsl/5.0 AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins MKL_THREADING_LAYER=INTEL LD_LIBRARY_PATH=/usr/lib/fsl/5.0::/.singularity.d/libs HOME=/home/users/oesteban OLDPWD=/home/users/oesteban/fmriprep/ds000114 PS1=Singularity> MINC_LIB_DIR=/opt/freesurfer/mni/lib FS_LICENSE=/home/users/oesteban/.freesurfer.txt FREESURFER_HOME=/opt/freesurfer MINC_BIN_DIR=/opt/freesurfer/mni/bin FSLDIR=/usr/share/fsl/5.0 AFNI_IMSAVE_WARNINGS=NO PYTHONNOUSERSITE=1 ANTSPATH=/usr/lib/ants FUNCTIONALS_DIR=/opt/freesurfer/sessions FSLMULTIFILEQUIT=TRUE FSLTCLSH=/usr/bin/tclsh NO_ET=1 ANTS_RANDOM_SEED=47970 TERM=xterm-256color PATH=/usr/local/miniconda/bin:/opt/ICA-AROMA:/usr/lib/ants:/usr/lib/fsl/5.0:/usr/lib/afni/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin OS=Linux PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_DIR=/opt/freesurfer/mni FSLOUTPUTTYPE=NIFTI_GZ KMP_INIT_AT_FORK=FALSE LANG=C MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 AFNI_MODELPATH=/usr/lib/afni/models LOCAL_DIR=/opt/freesurfer/local AROMA_VERSION=0.4.5 FS_OVERRIDE=0 FSLWISH=/usr/bin/wish IS_DOCKER_8395080871=1 SINGULARITY_APPNAME= PROMPT_COMMAND=PS1="Singularity> "; unset PROMPT_COMMAND FSL_DIR=/usr/share/fsl/5.0 FSF_OUTPUT_FORMAT=nii.gz SINGULARITY_CONTAINER=/home/groups/russpold/singularity_images/poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg MNI_DATAPATH=/opt/freesurfer/mni/data PWD=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1/sub-09 LC_ALL=C.UTF-8 NIPYPE_NO_ET=1 SUBJECTS_DIR=/oak/stanford/groups/russpold/data/openneuro.org/derivatives/ds000114/freesurfer-6.0.1 MKL_NUM_THREADS=1 OMP_NUM_THREADS=8 SINGULARITY_NAME=poldracklab_fmriprep_compcor-revision-2130-2020-07-23-0a9cb9ff47f9.simg CPATH=/usr/local/miniconda/include/: FIX_VERTEX_AREA= HOSTTYPE=x86_64-linux VENDOR=unknown OSTYPE=linux MACHTYPE=x86_64 SHLVL=1 LOGNAME=oesteban USER=oesteban GROUP=russpold HOST=sh02-05n27.int ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1 FS_OMP_NUM_THREADS=8 REQUIRE_FS_MATCH=0