Upload files to ''

Subject 34/sub-34_T1w.json

@@ -0,0 +1,65 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.25,
+	"Manufacturer": "Siemens",
+	"ManufacturersModelName": "TrioTim",
+	"InstitutionName": "Neuroscience Imaging Center",
+	"InstitutionAddress": "Irving St 1,-D6CCEA- San Francisco,CA,US,94122",
+	"DeviceSerialNumber": "35229",
+	"StationName": "MRC35229",
+	"PatientPosition": "HFS",
+	"ProcedureStepDescription": "Nagarajan_Lab^temp",
+	"SoftwareVersions": "syngo MR B15",
+	"MRAcquisitionType": "3D",
+	"SeriesDescription": "t1_mprage",
+	"ProtocolName": "t1_mprage",
+	"ScanningSequence": "GR\\IR",
+	"SequenceVariant": "SP\\MP\\OSP",
+	"ScanOptions": "IR",
+	"SequenceName": "*tfl3d1_ns",
+	"ImageType": ["ORIGINAL", "PRIMARY", "M", "ND", "NORM"],
+	"SeriesNumber": 3,
+	"AcquisitionNumber": 1,
+	"SliceThickness": 1,
+	"SAR": 0.101021,
+	"EchoTime": 0.00298,
+	"RepetitionTime": 2.3,
+	"InversionTime": 0.9,
+	"FlipAngle": 9,
+	"PartialFourier": 1,
+	"BaseResolution": 256,
+	"ShimSetting": [
+		7973,
+		-5704,
+		-2989,
+		13,
+		-383,
+		-570,
+		312,
+		6	],
+	"TxRefAmp": 392.113,
+	"PhaseResolution": 0.96,
+	"ReceiveCoilName": "HeadMatrix",
+	"CoilString": "T:HEA;HEP",
+	"PulseSequenceDetails": "%SiemensSeq%\\tfl",
+	"RefLinesPE": 24,
+	"PercentPhaseFOV": 93.75,
+	"PercentSampling": 96,
+	"PhaseEncodingSteps": 230,
+	"AcquisitionMatrixPE": 230,
+	"ReconMatrixPE": 240,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 240,
+	"DwellTime": 8.2e-06,
+	"ImageOrientationPatientDICOM": [
+		-0.0228218,
+		0.995476,
+		-0.0922354,
+		0.0564049,
+		-0.0908304,
+		-0.994268	],
+	"InPlanePhaseEncodingDirectionDICOM": "ROW",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210317"
+}

Subject 34/sub-34_T1w.nii

@@ -0,0 +1 @@
+/annex/objects/MD5-s19661152--cee4a633ec051e8e29d6a58861bfa472

Subject 34/sub-34_task-arrow_run-1.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/McAfeeDale/raw/sub-34_task-arrow_run-1.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

Subject 34/sub-34_task-arrow_run-1.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 08:54
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

Subject 34/sub-34_task-arrow_run-1.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 08:54  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

Subject 34/sub-34_task-arrow_run-1.ds/sub-34_task-arrow_run-1.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.8029
+	y = 7.91846
+	z = -25.2598
+measured left ear coil position relative to dewar (cm):
+	x = -4.48434
+	y = 6.40961
+	z = -27.0761
+measured right ear coil position relative to dewar (cm):
+	x = 6.91116
+	y = -4.3027
+	z = -28.1888
+measured nasion coil position relative to head (cm):
+	x = 9.8071
+	y = 0
+	z = 0
+measured left ear coil position relative to head (cm):
+	x = 0.0555499
+	y = 7.83959
+	z = 3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = -0.0555499
+	y = -7.83959
+	z = 0
+

Subject 34/sub-34_task-arrow_run-1.ds/sub-34_task-arrow_run-1.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1961760008--f2ff0884b3aa4585759383aa916181a1

Subject 34/sub-34_task-arrow_run-1.ds/sub-34_task-arrow_run-1.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

Subject 34/sub-34_task-arrow_run-2.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/McAfeeDale/raw/sub-34_task-arrow_run-2.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

Subject 34/sub-34_task-arrow_run-2.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 08:53
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

Subject 34/sub-34_task-arrow_run-2.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 08:53  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

Subject 34/sub-34_task-arrow_run-2.ds/sub-34_task-arrow_run-2.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.91919
+	y = 7.83467
+	z = -25.2575
+measured left ear coil position relative to dewar (cm):
+	x = -4.4514
+	y = 6.44117
+	z = -27.1165
+measured right ear coil position relative to dewar (cm):
+	x = 6.91027
+	y = -4.37372
+	z = -28.2733
+measured nasion coil position relative to head (cm):
+	x = 9.84614
+	y = 1.77636e-15
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = 0.0185083
+	y = 7.86426
+	z = 0
+measured right ear coil position relative to head (cm):
+	x = -0.0185083
+	y = -7.86426
+	z = 7.10543e-15
+

Subject 34/sub-34_task-arrow_run-2.ds/sub-34_task-arrow_run-2.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1917840008--9ac389255f0f6a0bd48c99254151e873

Subject 34/sub-34_task-arrow_run-2.ds/sub-34_task-arrow_run-2.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}

Subject 34/sub-34_task-arrow_run-3.ds/ClassFile.cls

@@ -0,0 +1,26 @@
+PATH OF DATASET:
+/data/research_meg2/leighton/lizraw/McAfeeDale/raw/sub-34_task-arrow_run-3.ds
+
+
+NUMBER OF CLASSES:
+1
+
+
+CLASSGROUPID:
+3
+NAME:
+BAD
+COMMENT:
+
+COLOR:
+Red
+EDITABLE:
+Yes
+CLASSID:
+1
+NUMBER OF TRIALS:
+0
+LIST OF TRIALS:
+TRIAL NUMBER
+
+

Subject 34/sub-34_task-arrow_run-3.ds/params.dsc

@@ -0,0 +1,32 @@
+
+// Head Localization parameters.
+// 08-Jun-2021 08:26
+
+CustomDs
+{
+	FixSensors:	False
+}
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+}
+
+// Data selector parameters.
+DsSelector
+{
+	RejectBadTrials:	FALSE
+	ForceEvenNumTargets:	FALSE
+	MaximumOverlap:	0
+	StartTime:	-0
+	EndTime:	5
+	EventRange:	ALL
+	WholeTrial:	TRUE
+	CondSearchStart:	0
+	CondSearchEnd:	0
+	TargetTrialOffset:	0
+}

Subject 34/sub-34_task-arrow_run-3.ds/processing.cfg

@@ -0,0 +1,33 @@
+// Processing configuration.
+// 08:26  08/06/2021
+
+// PROCESSING PARAMETERS
+processing
+{
+	// balance: order, adapted
+	// (adapted=0 -> not adapted)
+	// (adapted=1 -> adapted)
+	balance:	0,0
+	// lowpass: enable, filterOrder, fc
+	lowpass:	0,4,0.00000000000000000
+	// highpass: enable, filterOrder, fc
+	highpass:	0,4,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,4,0.00000000000000000,0.00000000000000000
+	// bandpass: enable, filterOrder, fc1, fc2
+	bandpass:	0,4,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// bandreject: enable, filterOrder, fc1, fc2
+	bandreject:	0,2,0.00000000000000000,0.00000000000000000
+	// offset: enable, baselineSelection, startPt, endPt
+	// (baseline=0 --> use pretrigger data)
+	// (baseline=1 --> use from startPt to endPt)
+	// (baseline=2 --> use whole trial)
+	// (baseline+=10 --> do trend removal)
+	offset:	0,0,1,1
+}

Subject 34/sub-34_task-arrow_run-3.ds/sub-34_task-arrow_run-3.hc

@@ -0,0 +1,37 @@
+standard nasion coil position relative to dewar (cm):
+	x = 5.65685
+	y = 5.65685
+	z = -27
+standard left ear coil position relative to dewar (cm):
+	x = -5.65685
+	y = 5.65685
+	z = -27
+standard right ear coil position relative to dewar (cm):
+	x = 5.65685
+	y = -5.65685
+	z = -27
+measured nasion coil position relative to dewar (cm):
+	x = 7.96873
+	y = 7.69318
+	z = -25.2784
+measured left ear coil position relative to dewar (cm):
+	x = -4.44324
+	y = 6.46052
+	z = -27.0937
+measured right ear coil position relative to dewar (cm):
+	x = 6.85315
+	y = -4.4624
+	z = -28.2842
+measured nasion coil position relative to head (cm):
+	x = 9.81685
+	y = -4.44089e-16
+	z = 3.55271e-15
+measured left ear coil position relative to head (cm):
+	x = -0.0212513
+	y = 7.87931
+	z = 3.55271e-15
+measured right ear coil position relative to head (cm):
+	x = 0.0212513
+	y = -7.87931
+	z = 3.55271e-15
+

Subject 34/sub-34_task-arrow_run-3.ds/sub-34_task-arrow_run-3.meg4

@@ -0,0 +1 @@
+/annex/objects/MD5-s1903200008--f67a27a137439f5a338440efb08a39d7

Subject 34/sub-34_task-arrow_run-3.ds/sub-34_task-arrow_run-3.newds

@@ -0,0 +1,17 @@
+// 
+// These parameters will appear in the new dataset.
+// 
+NewDatasetFields
+{
+	site:	
+	system:	DSQ-2010
+	institute:	
+	protocol:	parkinsons.rp
+	purpose:	
+	keywords:	parkinson, Liz
+	coefsName:	/opt/ctf/hardware/M021/M021_2205.coef
+	sensName:	/opt/ctf/hardware/M021/M021_2205.sens
+	appName:	Acq patch3-4.17-linux-20040429
+	systemType:	cmeg
+	bandwidth:	0.000000, 300.000000
+}