Update 'README.md'

README.md

@@ -47,3 +47,26 @@ Example:
                   -CONTAINER_PATH <path/to/brainageR.sif> \
 ```
 
+### Enigma folder:
+
+1) Building the containers
+
+Preprocessing: `singularity build --fakeroot cat_preprocessing.simg Singularity_r2042` 
+Prediction: `singularity build --fakeroot enigma_stacking_agepred.simg enigma_stacking_pred.def`
+
+/!\ It is important to not change the name of the containers
+
+2) Run the `get_brainage.sh` with the proper files and paths
+
+Example:
+
+```
+./get_brainage.sh -input <input_directory> \
+                  -output <output_directory> \
+                  -BIDS <yes/no> \
+                  -CONDOR <yes/no> \
+                  -RAW <yes/no> \
+                  -RUN_FILE run_enigma.sh \
+                  -SAVE_ALL <yes/no> \
+                  -CONTAINER_PATH <path/to/brainageR.sif> \
+```