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@@ -84,11 +84,25 @@ Prediction: `singularity build --fakeroot BA_predict.sif BA_predict.recipe `
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2) Run the `get_brainage.sh` with the proper files and paths
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-Examples:
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+Examples:
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**For one subject**:
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+```
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+./run_more.sh -input <path/to/input_file> \
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+ -output <path/to/output_dir> \
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+ -RAW <yes/no> \
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+ -SAVE_FILE <yes/no> \
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+ -CONTAINER_PATH <path/to/container_dir> \
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+ -MODEL_NAME <4sites.S4_R4_pca.gauss.models>
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+```
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+* input: path to a single T1 weighted MRI file (nii, nii.gz or mgz)
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+* output: path to the output directory
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+* raw: is the input file raw or preprocessed ? (default: yes)
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+* save_file: Do you want to save intermidiate files ? (default: no)
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+* container_path: path where the container(s) should be stored
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+* Model_name: name of the trained model that you want to use (default: 4sites.S4_R4_pca.gauss.models)
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