# === GLOBAL PARAMETERS ====================================================== neurotic_config: # prepended to remote_data_dir unless remote_data_dir is already a full URL remote_data_root: https://gin.g-node.org/jpgill86/Gill-Chiel-eNeuro-2020-data/raw/master # these aliases are not officially part of the neurotic spec, but are # instead a feature of the YAML language, and nesting them under # neurotic_config ensures neurotic will not mistake them for a dataset aliases: colors: - &color-B38 'EFBF46' # yellow - &color-I2 'DC5151' # red - &color-B8 'DA8BC3' # pink - &color-B6B9 '64B5CD' # light blue - &color-B3B6B9 '5A9BC5' # medium blue - &color-B3 '4F80BD' # dark blue - &color-B4B5 '00A86B' # jade green - &color-traces '666666' # dark gray epoch_encoder_possible_labels: &epoch_encoder_possible_labels - B38 activity - I2 protraction activity - B8 activity - B3/6/9/10 activity - B4/B5 activity - Inward movement - Force shoulder end - Force rise start - Force plateau start - Force plateau end - Force drop end filters: &filters - channel: I2 lowpass: 100 # Hz filters-JG07: &filters-JG07 # I2 channel was named differently for JG07 - channel: I2-L lowpass: 100 # Hz burst_detectors: &burst_detectors # used only if fast loading is off (lazy=False) - &burst_detectors-B38 spiketrain: B38 thresholds: [8, 5] # Hz, based on McManus et al. 2014 - &burst_detectors-I2 spiketrain: I2 thresholds: [10, 5] # Hz, same as Cullins et al. 2015a (based on Hurwitz et al. 1996) - &burst_detectors-B8 spiketrain: B8a/b thresholds: [3, 3] # Hz, same as Cullins et al. 2015a (based on Morton and Chiel 1993a) - &burst_detectors-B6B9 spiketrain: B6/B9 thresholds: [10, 5] # Hz, based on Lu et al. 2015 - &burst_detectors-B3 spiketrain: B3 thresholds: [8, 2] # Hz, based on Lu et al. 2015 - &burst_detectors-B4B5 spiketrain: B4/B5 thresholds: [3, 3] # Hz, same as Cullins et al. 2015a ? (Table 1 says 3 Hz, text says first/last spike; based on Warman and Chiel 1995 ?) # === DATA SETS ============================================================== # --- ANIMAL 1 --------------------------------------------------------------- Animal 1 Unloaded 1: description: 'JG07 2018-05-20 002 [1169, 1191]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1 data_file: Animal 1 Unloaded 1.axgx video_file: Animal 1 Unloaded 1.mp4 annotations_file: Animal 1 Unloaded 1 Annotations.csv epoch_encoder_file: Animal 1 Unloaded 1 Epoch Encoder.csv video_offset: 1169 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: &plots-JG07 - channel: I2-L ylim: [-30, 30] # uV color: *color-traces - channel: RN-L ylim: [-60, 60] # uV color: *color-traces - channel: BN2-L ylim: [-100, 100] # uV color: *color-traces - channel: BN3-L ylim: [-80, 80] # uV color: *color-traces - channel: Force ylim: [-10, 300] # mN color: *color-traces filters: *filters-JG07 # used only if fast loading is off (lazy=False) amplitude_discriminators: &litude_discriminators-JG07 # used only if fast loading is off (lazy=False) - name: B38 channel: BN2-L units: uV amplitude: [15, 30] epoch: B38 activity color: *color-B38 - name: I2 channel: I2-L units: uV amplitude: [2, 30] epoch: I2 protraction activity color: *color-I2 - name: B8a/b channel: RN-L units: uV amplitude: [-40, -10] epoch: B8 activity color: *color-B8 - name: B6/B9 channel: BN2-L units: uV amplitude: [-40, -12] epoch: B3/6/9/10 activity color: *color-B6B9 - name: B3 channel: BN2-L units: uV amplitude: [40, 100] epoch: B3/6/9/10 activity color: *color-B3 - name: B4/B5 channel: BN3-L units: uV amplitude: [50, 120] epoch: B4/B5 activity color: *color-B4B5 burst_detectors: &burst_detectors-JG07 # used only if fast loading is off (lazy=False) - *burst_detectors-B38 - *burst_detectors-I2 - spiketrain: B8a/b thresholds: [2, 2] # Hz, both thresholds reduced for this animal because B8a/b signal was weak with few spikes - *burst_detectors-B6B9 - *burst_detectors-B3 - *burst_detectors-B4B5 Animal 1 Unloaded 2: description: 'JG07 2018-05-20 002 [1495, 1518]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2 data_file: Animal 1 Unloaded 2.axgx video_file: Animal 1 Unloaded 2.mp4 annotations_file: Animal 1 Unloaded 2 Annotations.csv epoch_encoder_file: Animal 1 Unloaded 2 Epoch Encoder.csv video_offset: 1495 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG07 filters: *filters-JG07 # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False) Animal 1 Unloaded 3: description: 'JG07 2018-05-20 002 [1581, 1615]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3 data_file: Animal 1 Unloaded 3.axgx video_file: Animal 1 Unloaded 3.mp4 annotations_file: Animal 1 Unloaded 3 Annotations.csv epoch_encoder_file: Animal 1 Unloaded 3 Epoch Encoder.csv video_offset: 1581 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG07 filters: *filters-JG07 # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False) Animal 1 Loaded 1: description: 'JG07 2018-05-20 002 [2716, 2755]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1 data_file: Animal 1 Loaded 1.axgx video_file: Animal 1 Loaded 1.mp4 annotations_file: Animal 1 Loaded 1 Annotations.csv epoch_encoder_file: Animal 1 Loaded 1 Epoch Encoder.csv video_offset: 2716 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG07 filters: *filters-JG07 # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False) # --- ANIMAL 2 --------------------------------------------------------------- Animal 2 Unloaded 1: description: 'JG08 2018-06-21 002 [ 256, 287]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1 data_file: Animal 2 Unloaded 1.axgx video_file: Animal 2 Unloaded 1.mp4 annotations_file: Animal 2 Unloaded 1 Annotations.csv epoch_encoder_file: Animal 2 Unloaded 1 Epoch Encoder.csv video_offset: 256 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: &plots-JG08 - channel: I2 ylim: [-30, 30] # uV color: *color-traces - channel: RN ylim: [-100, 100] # uV color: *color-traces - channel: BN2 ylim: [-150, 150] # uV color: *color-traces - channel: BN3 ylim: [-150, 150] # uV color: *color-traces - channel: Force ylim: [-10, 300] # mN color: *color-traces filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: &litude_discriminators-JG08 # used only if fast loading is off (lazy=False) - name: B38 channel: BN2 units: uV amplitude: [17, 26] epoch: B38 activity color: *color-B38 - name: I2 channel: I2 units: uV amplitude: [2, 75] epoch: I2 protraction activity color: *color-I2 - name: B8a/b channel: RN units: uV amplitude: [-50, -12] epoch: B8 activity color: *color-B8 - name: B6/B9 channel: BN2 units: uV amplitude: [-50, -30] epoch: B3/6/9/10 activity color: *color-B6B9 - name: B3 channel: BN2 units: uV amplitude: [50, 150] epoch: B3/6/9/10 activity color: *color-B3 - name: B4/B5 channel: BN3 units: uV amplitude: [50, 200] epoch: B4/B5 activity color: *color-B4B5 burst_detectors: &burst_detectors-JG08 # used only if fast loading is off (lazy=False) - *burst_detectors-B38 - *burst_detectors-I2 - *burst_detectors-B8 - spiketrain: B6/B9 thresholds: [10, 3] # Hz, end threshold reduced for this animal - *burst_detectors-B3 - *burst_detectors-B4B5 Animal 2 Unloaded 2: description: 'JG08 2018-06-21 002 [ 454, 481]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2 data_file: Animal 2 Unloaded 2.axgx video_file: Animal 2 Unloaded 2.mp4 annotations_file: Animal 2 Unloaded 2 Annotations.csv epoch_encoder_file: Animal 2 Unloaded 2 Epoch Encoder.csv video_offset: 454 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG08 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False) Animal 2 Loaded 1: description: 'JG08 2018-06-21 002 [ 141, 210]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1 data_file: Animal 2 Loaded 1.axgx video_file: Animal 2 Loaded 1.mp4 annotations_file: Animal 2 Loaded 1 Annotations.csv epoch_encoder_file: Animal 2 Loaded 1 Epoch Encoder.csv video_offset: 141 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG08 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False) Animal 2 Loaded 2: description: 'JG08 2018-06-21 002 [ 660, 701]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2 data_file: Animal 2 Loaded 2.axgx video_file: Animal 2 Loaded 2.mp4 annotations_file: Animal 2 Loaded 2 Annotations.csv epoch_encoder_file: Animal 2 Loaded 2 Epoch Encoder.csv video_offset: 660 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG08 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False) Animal 2 Loaded 3: description: 'JG08 2018-06-21 002 [1448, 1477]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3 data_file: Animal 2 Loaded 3.axgx video_file: Animal 2 Loaded 3.mp4 annotations_file: Animal 2 Loaded 3 Annotations.csv epoch_encoder_file: Animal 2 Loaded 3 Epoch Encoder.csv video_offset: 1448 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG08 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False) # --- ANIMAL 3 --------------------------------------------------------------- Animal 3 Unloaded 1: description: 'JG11 2019-04-03 001 [1791, 1819]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1 data_file: Animal 3 Unloaded 1.axgx video_file: Animal 3 Unloaded 1.mp4 annotations_file: Animal 3 Unloaded 1 Annotations.csv epoch_encoder_file: Animal 3 Unloaded 1 Epoch Encoder.csv video_offset: 1791 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: &plots-JG11 - channel: I2 ylim: [-30, 30] # uV color: *color-traces - channel: RN ylim: [-30, 30] # uV color: *color-traces - channel: BN2 ylim: [-100, 100] # uV color: *color-traces - channel: BN3-PROX ylim: [-100, 100] # uV color: *color-traces - channel: Force ylim: [-10, 500] # mN color: *color-traces filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: &litude_discriminators-JG11 # used only if fast loading is off (lazy=False) - name: B38 channel: BN2 units: uV amplitude: [20, 50] epoch: B38 activity color: *color-B38 - name: I2 channel: I2 units: uV amplitude: [2, 20] epoch: I2 protraction activity color: *color-I2 - name: B8a/b channel: RN units: uV amplitude: [-30, -8] epoch: B8 activity color: *color-B8 - name: B6/B9 channel: BN2 units: uV amplitude: [-60, -15] epoch: B3/6/9/10 activity color: *color-B6B9 - name: B3 channel: BN2 units: uV amplitude: [-120, -60] epoch: B3/6/9/10 activity color: *color-B3 - name: B4/B5 channel: BN3-PROX units: uV amplitude: [70, 150] epoch: B4/B5 activity color: *color-B4B5 burst_detectors: &burst_detectors-JG11 # used only if fast loading is off (lazy=False) - *burst_detectors-B38 - *burst_detectors-I2 - *burst_detectors-B8 - *burst_detectors-B6B9 - *burst_detectors-B3 - spiketrain: B4/B5 thresholds: [1.5, 1.5] # Hz, both thresholds reduced for this animal because only one neuron appeared to project Animal 3 Unloaded 2: description: 'JG11 2019-04-03 004 [ 551, 568]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2 data_file: Animal 3 Unloaded 2.axgx video_file: Animal 3 Unloaded 2.mp4 annotations_file: Animal 3 Unloaded 2 Annotations.csv epoch_encoder_file: Animal 3 Unloaded 2 Epoch Encoder.csv video_offset: 551 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG11 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False) Animal 3 Loaded 1: description: 'JG11 2019-04-03 004 [1226, 1280]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1 data_file: Animal 3 Loaded 1.axgx video_file: Animal 3 Loaded 1.mp4 annotations_file: Animal 3 Loaded 1 Annotations.csv epoch_encoder_file: Animal 3 Loaded 1 Epoch Encoder.csv video_offset: 1226 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG11 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False) # --- ANIMAL 4 --------------------------------------------------------------- Animal 4 Unloaded 1: description: 'JG12 2019-05-10 002 [ 147, 165]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1 data_file: Animal 4 Unloaded 1.axgx video_file: Animal 4 Unloaded 1.mp4 annotations_file: Animal 4 Unloaded 1 Annotations.csv epoch_encoder_file: Animal 4 Unloaded 1 Epoch Encoder.csv video_offset: 147 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: &plots-JG12 - channel: I2 ylim: [-50, 50] # uV color: *color-traces - channel: RN ylim: [-25, 25] # uV color: *color-traces - channel: BN2 ylim: [-45, 45] # uV color: *color-traces - channel: BN3-DIST ylim: [-60, 60] # uV color: *color-traces - channel: Force ylim: [-10, 500] # mN color: *color-traces filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: &litude_discriminators-JG12 # used only if fast loading is off (lazy=False) - name: B38 channel: BN2 units: uV amplitude: [7, 20] epoch: B38 activity color: *color-B38 - name: I2 channel: I2 units: uV amplitude: [2, 75] epoch: I2 protraction activity color: *color-I2 - name: B8a/b channel: RN units: uV amplitude: [-30, -8] epoch: B8 activity color: *color-B8 - name: B6/B9 channel: BN2 units: uV amplitude: [-25, -9] epoch: B3/6/9/10 activity color: *color-B6B9 - name: B3 channel: BN2 units: uV amplitude: [-60, -25] epoch: B3/6/9/10 activity color: *color-B3 - name: B4/B5 channel: BN3-DIST units: uV amplitude: [-80, -20] epoch: B4/B5 activity color: *color-B4B5 burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Unloaded 2: description: 'JG12 2019-05-10 002 [ 228, 245]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 data_file: Animal 4 Unloaded 2.axgx video_file: Animal 4 Unloaded 2.mp4 annotations_file: Animal 4 Unloaded 2 Annotations.csv epoch_encoder_file: Animal 4 Unloaded 2 Epoch Encoder.csv video_offset: 228 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Unloaded 3: description: 'JG12 2019-05-10 002 [ 277, 291]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3 data_file: Animal 4 Unloaded 3.axgx video_file: Animal 4 Unloaded 3.mp4 annotations_file: Animal 4 Unloaded 3 Annotations.csv epoch_encoder_file: Animal 4 Unloaded 3 Epoch Encoder.csv video_offset: 277 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Loaded 1: description: 'JG12 2019-05-10 002 [ 434, 465]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1 data_file: Animal 4 Loaded 1.axgx video_file: Animal 4 Loaded 1.mp4 annotations_file: Animal 4 Loaded 1 Annotations.csv epoch_encoder_file: Animal 4 Loaded 1 Epoch Encoder.csv video_offset: 434 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Loaded 2: description: 'JG12 2019-05-10 002 [2897, 2937]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 data_file: Animal 4 Loaded 2.axgx video_file: Animal 4 Loaded 2.mp4 annotations_file: Animal 4 Loaded 2 Annotations.csv epoch_encoder_file: Animal 4 Loaded 2 Epoch Encoder.csv video_offset: 2897 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Unloaded 2 Superset: description: 'JG12 2019-05-10 002 [ 223.4, 261.4]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset data_file: Animal 4 Unloaded 2 Superset.axgx video_file: Animal 4 Unloaded 2 Superset.mp4 annotations_file: Animal 4 Unloaded 2 Superset Annotations.csv epoch_encoder_file: Animal 4 Unloaded 2 Superset Epoch Encoder.csv video_offset: 223.4 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) Animal 4 Loaded 2 Superset: description: 'JG12 2019-05-10 002 [2875.3, 3039.3]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset data_file: Animal 4 Loaded 2 Superset.axgx video_file: Animal 4 Loaded 2 Superset.mp4 annotations_file: Animal 4 Loaded 2 Superset Annotations.csv epoch_encoder_file: Animal 4 Loaded 2 Superset Epoch Encoder.csv video_offset: 2875.3 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG12 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False) # --- ANIMAL 5 --------------------------------------------------------------- Animal 5 Unloaded 1: description: 'JG14 2019-07-30 001 [1834, 1865]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1 data_file: Animal 5 Unloaded 1.axgx video_file: Animal 5 Unloaded 1.mp4 annotations_file: Animal 5 Unloaded 1 Annotations.csv epoch_encoder_file: Animal 5 Unloaded 1 Epoch Encoder.csv video_offset: 1834 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: &plots-JG14 - channel: I2 ylim: [-30, 30] # uV color: *color-traces - channel: RN ylim: [-30, 30] # uV color: *color-traces - channel: BN2 ylim: [-50, 50] # uV color: *color-traces - channel: BN3-PROX ylim: [-60, 60] # uV color: *color-traces - channel: Force ylim: [-10, 500] # mN color: *color-traces filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: &litude_discriminators-JG14 # used only if fast loading is off (lazy=False) - name: B38 channel: BN2 units: uV amplitude: [12, 25] epoch: B38 activity color: *color-B38 - name: I2 channel: I2 units: uV amplitude: [1, 10] epoch: I2 protraction activity color: *color-I2 - name: B8a/b channel: RN units: uV amplitude: [-15, -6] epoch: B8 activity color: *color-B8 - name: B6/B9 channel: BN2 units: uV amplitude: [-30, -20] epoch: B3/6/9/10 activity color: *color-B6B9 - name: B3 channel: BN2 units: uV amplitude: [-80, -30] epoch: B3/6/9/10 activity color: *color-B3 - name: B4/B5 channel: BN3-PROX units: uV amplitude: [-40, -13] epoch: B4/B5 activity color: *color-B4B5 burst_detectors: &burst_detectors-JG14 # used only if fast loading is off (lazy=False) - *burst_detectors-B38 - *burst_detectors-I2 - *burst_detectors-B8 - spiketrain: B6/B9 thresholds: [4, 2] # Hz, both thresholds reduced for this animal because B6/B9 always fired slowly - *burst_detectors-B3 - *burst_detectors-B4B5 Animal 5 Unloaded 2: description: 'JG14 2019-07-30 001 [1909, 1943]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2 data_file: Animal 5 Unloaded 2.axgx video_file: Animal 5 Unloaded 2.mp4 annotations_file: Animal 5 Unloaded 2 Annotations.csv epoch_encoder_file: Animal 5 Unloaded 2 Epoch Encoder.csv video_offset: 1909 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG14 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False) Animal 5 Unloaded 3: description: 'JG14 2019-07-30 001 [2049, 2084]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3 data_file: Animal 5 Unloaded 3.axgx video_file: Animal 5 Unloaded 3.mp4 annotations_file: Animal 5 Unloaded 3 Annotations.csv epoch_encoder_file: Animal 5 Unloaded 3 Epoch Encoder.csv video_offset: 2049 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG14 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False) Animal 5 Loaded 1: description: 'JG14 2019-07-29 004 [ 828, 870]' data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1 remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1 data_file: Animal 5 Loaded 1.axgx video_file: Animal 5 Loaded 1.mp4 annotations_file: Animal 5 Loaded 1 Annotations.csv epoch_encoder_file: Animal 5 Loaded 1 Epoch Encoder.csv video_offset: 828 # sec epoch_encoder_possible_labels: *epoch_encoder_possible_labels plots: *plots-JG14 filters: *filters # used only if fast loading is off (lazy=False) amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False) burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)