FROM jupyter/scipy-notebook:ubuntu-20.04 # install netbase USER root RUN apt update -y \ && apt install -y netbase \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* # mamba installを使いたかったがdatalad pushに失敗するため # conda installを利用している(2/2時点) RUN conda install --quiet --yes git-annex==8.20210903 \ && conda install --quiet --yes git==2.35.0 \ && conda install --quiet --yes datalad==0.15.4 \ && conda clean -i -t -y # install the notebook package etc. RUN pip install --no-cache --upgrade pip \ && pip install --no-cache notebook \ && pip install --no-cache jupyter_contrib_nbextensions \ && pip install --no-cache git+https://github.com/NII-cloud-operation/Jupyter-LC_run_through \ && pip install --no-cache git+https://github.com/NII-cloud-operation/Jupyter-multi_outputs \ && pip install --no-cache datalad==0.15.4 \ && pip install --no-cache lxml==4.7.1 \ && pip install --no-cache blockdiag==3.0.0 \ && pip install --no-cache -U nbformat==5.2.0 \ && pip install --no-cache papermill==2.3.3 \ && pip install --no-cache black==21.12b0 RUN jupyter contrib nbextension install --user \ && jupyter nbextensions_configurator enable --user \ && jupyter run-through quick-setup --user \ && jupyter nbextension install --py lc_multi_outputs --user \ && jupyter nbextension enable --py lc_multi_outputs --user # install Japanese-font (for blockdiag) ARG font_deb=fonts-ipafont-gothic_00303-18ubuntu1_all.deb RUN mkdir ${HOME}/.fonts \ && wget -P ${HOME}/.fonts http://archive.ubuntu.com/ubuntu/pool/universe/f/fonts-ipafont/${font_deb} \ && dpkg-deb -x ${HOME}/.fonts/${font_deb} ~/.fonts \ && cp ~/.fonts/usr/share/fonts/opentype/ipafont-gothic/ipag.ttf ~/.fonts/ipag.ttf \ && rm ${HOME}/.fonts/${font_deb} \ && rm -rf ${HOME}/.fonts/etc ${HOME}/.fonts/usr \ && rm .wget-hsts ARG NB_USER=jovyan ARG NB_UID=1000 RUN rm -rf ${HOME}/work # prepare datalad procedure dir RUN mkdir -p ${HOME}/.config/datalad/procedures WORKDIR ${HOME} COPY . ${HOME} USER root RUN chown -R ${NB_UID} ${HOME} USER ${NB_USER} # Specify the default command to run CMD ["jupyter", "notebook", "--ip", "0.0.0.0"]