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@@ -1,3 +1,5 @@
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+[![G-Node GIN](https://gin.g-node.org/img/favicon.png)](https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/)
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+**👈🏼 Click to open in G-Node GIN repository!**
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</br>
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@@ -9,7 +11,7 @@ A set of high-density EEG (electroencephalogram) recording obtained from awake,
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* Title: Dataset of high-density EEG recordings with auditory and optogenetic stimulation in mice
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* Authors: Eunjin Hwang, Hio-Been Han, Jeong-Yeong Kim, & Jee Hyun Choi [corresponding: jeechoi@kist.re.kr]
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-* Version: 2.0.0 (2020-03-26)
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+* Version: 2.0.1
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* Related publication: [Hwang et al., 2019, *Brain Structure and Function*](https://link.springer.com/article/10.1007/s00429-019-01845-5).
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* Dataset repository: G-Node GIN (DOI: 10.12751/g-node.c5c7ed https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/)
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@@ -98,7 +100,7 @@ def download_dataset( animal_list = range(1,7), dir_dataset = dir_dataset ):
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file_ids.append( 'dataset_2/epochs_animal%s.fdt'%set_id )
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# Request & download
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- repo_url = 'https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/raw/f6c0dfc00c03922a2311f9551e335bdd1f571436/'
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+ repo_url = 'https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/raw/f361198e4444c29969b4b6014cfd3e771eca381d/'
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for file_id in file_ids:
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fname_dest = "%s%s%s"%(dir_origin, dir_dataset, file_id)
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if path.isfile(fname_dest) is False:
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@@ -148,7 +150,7 @@ if not path.isdir(dir_fig): mkdir('%s%s'%(dir_origin, dir_fig))
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2)=== List of available files in google drive ====
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- ['dataset_2', 'meta.csv', 'dataset_1', 'montage.csv']
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+ ['dataset_1', 'meta.csv', 'dataset_2', 'montage.csv']
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============= End of the list ==================
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@@ -281,11 +283,11 @@ meta
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<td>animal5</td>
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<td>5</td>
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<td>male</td>
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- <td>99</td>
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- <td>99</td>
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- <td>96</td>
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+ <td>191</td>
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+ <td>191</td>
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+ <td>189</td>
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<td>176</td>
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- <td>100</td>
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+ <td>189</td>
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<td>176</td>
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<td>86</td>
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<td>167</td>
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@@ -297,11 +299,11 @@ meta
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<td>animal6</td>
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<td>4</td>
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<td>male</td>
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- <td>96</td>
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- <td>97</td>
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- <td>96</td>
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+ <td>196</td>
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+ <td>194</td>
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+ <td>195</td>
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<td>179</td>
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- <td>94</td>
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+ <td>194</td>
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<td>179</td>
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<td>86</td>
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<td>179</td>
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@@ -479,6 +481,7 @@ In this example, we'll use Dataset 2 as it shows much clear difference across th
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```python
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# Demo 2-2a. Function for multi-channel plotting
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+import numpy as np; from matplotlib import pyplot as plt
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def plot_multichan( x, y, spacing = 3000, figsize = (10,10), ch_names = EEG.ch_names ):
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# Set color theme
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color_template = np.array([[1,.09,.15],[1,.75,.28],[.4,.2,0],[.6,.7,.3],[.55,.55,.08]])
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@@ -1080,7 +1083,8 @@ for periodIdx in range(len(period)):
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0.01670083 0.01284626 0.01274209 0.00321511 0.01274209 0.00490618]
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-![png](figures/output_35_1.png)
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+
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+![png](output_35_1.png)
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### 3-4. Band-power topography: Comparison across various experimental conditions
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@@ -1165,12 +1169,12 @@ plt.subplots_adjust(wspace=.1, hspace=.3)
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plt.gcf().savefig(dir_fig+'fig4-1.png', format='png', dpi=300);
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```
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- ...skipping already existing file [/content/dataset/meta.csv]...
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- ...skipping already existing file [/content/dataset/montage.csv]...
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- ...skipping already existing file [/content/dataset/dataset_1/epochs_animal3.set]...
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- ...skipping already existing file [/content/dataset/dataset_1/epochs_animal3.fdt]...
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- ...skipping already existing file [/content/dataset/dataset_2/epochs_animal3.set]...
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- ...skipping already existing file [/content/dataset/dataset_2/epochs_animal3.fdt]...
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+ ...copying to [/content/dataset/meta.csv]...
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+ ...copying to [/content/dataset/montage.csv]...
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+ ...copying to [/content/dataset/dataset_1/epochs_animal3.set]...
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+ ...copying to [/content/dataset/dataset_1/epochs_animal3.fdt]...
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+ ...copying to [/content/dataset/dataset_2/epochs_animal3.set]...
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+ ...copying to [/content/dataset/dataset_2/epochs_animal3.fdt]...
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@@ -1230,9 +1234,3 @@ EEG
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'5-[50 Hz]': 93>
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-
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-
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-# 4. Licensing
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-<a rel="license" href="https://creativecommons.org/licenses/by-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.
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-
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-See `LICENSE` file for the full license.
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