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업데이트 'README.md'

Hio-Been Han 1 year ago
parent
commit
63274ef6d1
1 changed files with 22 additions and 24 deletions
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      README.md

+ 22 - 24
README.md

@@ -1,3 +1,5 @@
+[![G-Node GIN](https://gin.g-node.org/img/favicon.png)](https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/)
+**👈🏼 Click to open in G-Node GIN repository!**
 
 </br>
 
@@ -9,7 +11,7 @@ A set of high-density EEG (electroencephalogram) recording obtained from awake,
 
 * Title: Dataset of high-density EEG recordings with auditory and optogenetic stimulation in mice
 * Authors: Eunjin Hwang, Hio-Been Han, Jeong-Yeong Kim, & Jee Hyun Choi [corresponding: jeechoi@kist.re.kr]
-* Version: 2.0.0 (2020-03-26)
+* Version: 2.0.1
 * Related publication: [Hwang et al., 2019, *Brain Structure and Function*](https://link.springer.com/article/10.1007/s00429-019-01845-5).
 * Dataset repository: G-Node GIN (DOI: 10.12751/g-node.c5c7ed https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/)
 
@@ -98,7 +100,7 @@ def download_dataset( animal_list = range(1,7), dir_dataset = dir_dataset ):
     file_ids.append( 'dataset_2/epochs_animal%s.fdt'%set_id )
 
   # Request & download
-  repo_url = 'https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/raw/f6c0dfc00c03922a2311f9551e335bdd1f571436/'
+  repo_url = 'https://gin.g-node.org/hiobeen/Mouse_hdEEG_ASSR_Hwang_et_al/raw/f361198e4444c29969b4b6014cfd3e771eca381d/'
   for file_id in file_ids:
     fname_dest = "%s%s%s"%(dir_origin, dir_dataset, file_id)
     if path.isfile(fname_dest) is False:
@@ -148,7 +150,7 @@ if not path.isdir(dir_fig): mkdir('%s%s'%(dir_origin, dir_fig))
     
     2)=== List of available files in google drive ====
     
-    ['dataset_2', 'meta.csv', 'dataset_1', 'montage.csv']
+    ['dataset_1', 'meta.csv', 'dataset_2', 'montage.csv']
     
     ============= End of the list ==================
     
@@ -281,11 +283,11 @@ meta
       <td>animal5</td>
       <td>5</td>
       <td>male</td>
-      <td>99</td>
-      <td>99</td>
-      <td>96</td>
+      <td>191</td>
+      <td>191</td>
+      <td>189</td>
       <td>176</td>
-      <td>100</td>
+      <td>189</td>
       <td>176</td>
       <td>86</td>
       <td>167</td>
@@ -297,11 +299,11 @@ meta
       <td>animal6</td>
       <td>4</td>
       <td>male</td>
-      <td>96</td>
-      <td>97</td>
-      <td>96</td>
+      <td>196</td>
+      <td>194</td>
+      <td>195</td>
       <td>179</td>
-      <td>94</td>
+      <td>194</td>
       <td>179</td>
       <td>86</td>
       <td>179</td>
@@ -479,6 +481,7 @@ In this example, we'll use Dataset 2 as it shows much clear difference across th
 
 ```python
 # Demo 2-2a. Function for multi-channel plotting
+import numpy as np; from matplotlib import pyplot as plt
 def plot_multichan( x, y, spacing = 3000, figsize = (10,10), ch_names = EEG.ch_names ):
   # Set color theme
   color_template = np.array([[1,.09,.15],[1,.75,.28],[.4,.2,0],[.6,.7,.3],[.55,.55,.08]])
@@ -1080,7 +1083,8 @@ for periodIdx in range(len(period)):
      0.01670083 0.01284626 0.01274209 0.00321511 0.01274209 0.00490618]
 
 
-![png](figures/output_35_1.png)
+
+![png](output_35_1.png)
 
 
 ### 3-4. Band-power topography: Comparison across various experimental conditions
@@ -1165,12 +1169,12 @@ plt.subplots_adjust(wspace=.1, hspace=.3)
 plt.gcf().savefig(dir_fig+'fig4-1.png', format='png', dpi=300);
 ```
 
-    ...skipping already existing file [/content/dataset/meta.csv]...
-    ...skipping already existing file [/content/dataset/montage.csv]...
-    ...skipping already existing file [/content/dataset/dataset_1/epochs_animal3.set]...
-    ...skipping already existing file [/content/dataset/dataset_1/epochs_animal3.fdt]...
-    ...skipping already existing file [/content/dataset/dataset_2/epochs_animal3.set]...
-    ...skipping already existing file [/content/dataset/dataset_2/epochs_animal3.fdt]...
+    ...copying to [/content/dataset/meta.csv]...
+    ...copying to [/content/dataset/montage.csv]...
+    ...copying to [/content/dataset/dataset_1/epochs_animal3.set]...
+    ...copying to [/content/dataset/dataset_1/epochs_animal3.fdt]...
+    ...copying to [/content/dataset/dataset_2/epochs_animal3.set]...
+    ...copying to [/content/dataset/dataset_2/epochs_animal3.fdt]...
 
 
 
@@ -1230,9 +1234,3 @@ EEG
      '5-[50 Hz]': 93>
 
 
-
-
-# 4. Licensing
-<a rel="license" href="https://creativecommons.org/licenses/by-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.
-
-See `LICENSE` file for the full license.