[1.07677757461369 0.115571805114132 0.0216697571316022 8.93919030594143;-0.0884415777790016 1.08854728892166 0.181942351437833 -38.57382826321;-0.0131150870820627 -0.135886628788853 1.1346853053751 -0.705348528213458;0 0 0 1] [1.07677757461369 0.115571805114132 0.0216697571316022 8.93919030594143;-0.0884415777790016 1.08854728892166 0.181942351437833 -38.57382826321;-0.0131150870820627 -0.135886628788853 1.1346853053751 -0.705348528213458;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [346.628555377187 430.091528589172 177.301108276992 263.359637177936 148.99476740686 31.8803698951167 74.5348201151889 501.348489402307 899.450479741164 700.761659623862 354.396936076322 251.822556446994 24.3097958326445] [1253.90783128149;219.646866368654;1576.70483864835;892.954149706739;2792.55057835388;199.700556249038;750.074248017369;15703.184569247;6564.39833260615;21626.5975884036;3810.95756783285;11525.1631482122;172.263887445823] -5.74381875991821 [8.93919030594143 -38.57382826321 -0.705348528213458] [0.121864971300321 0.0220706995023057 0.0798559619531818] [1.08048316200677 1.10271875031453 1.14858618143852] [0.0256581529910657 -0.00654357518139014 0.0382937085589017] [8.93919030594143 -38.57382826321 -0.705348528213458] [0.121864971300321 0.0220706995023057 0.0798559619531818] [1.08048316200677 1.10271875031453 1.14858618143852] [0.0256581529910657 -0.00654357518139014 0.0382937085589017] /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5 sub-0025991_ses-5_run-1_T1w /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/sub-0025991_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/sub-0025991_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/mri/msub-0025991_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/mri/p0sub-0025991_ses-5_run-1_T1w.nii ../XHCUMS/sub-0025991/ses-5/sub-0025991_ses-5_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_359023/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 0.381689977858469 10 0.0633674934506416 0.0650704056024551 [1.0000000095219 0.999999971152771 1.00000001189861] [1.00000007123544 0.99999996788248 1.00000001230151] 0.999999997524427 0 [9.1879997253418 134.800003051758 333.544006347656 443.670013427734] [0.0207090843468904 0.303829431533813 0.751783967018127 1] T1 [43.8023866357568 56.2778860598193 38.1294284645819 21.658402300539] [0.100815184414387 0.129528686404228 0.0877583548426628 0.0498487874865532] 112.45484161377 0.253465056419373 0.203187346458435 0.141147002577782 0.477167010307312 [2.0000000190438 1.99999994230554 2.00000002379722] 1.99999999504885 1.93462944030762 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.28135776519775 2.35726404190063 1.64327132701874 1.81632653061224 1.09542249446462 1.5 1.26734983921051 1.30140805244446 2.15696564304458 2.22685315729129 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-021916 1639 1639 18 0.381689977858469 10 0.0633674934506416 0.0650704056024551 18 0.381689977858469 [219.59330148744 618.976118101908 511.381100804728 0 0] 0.72381964506153 0.000536182351965191 1868.28477601886 1349.95052039408 [0.162667666829253 0.458517633610169 0.378814699560578 0 0] [2.39862564862482 0.610070037936186] [2.39826560020447 0.725974706133845 1] [1.81930135081096 0.239807622709266 0.314342468520638;2.44414396042802 0.17498395839613 0.438307184701367;3.08571331372316 0.265523781407715 0.247350346777995] [0.854739357180573 0.288607584793424 0.52959716339998;4.04685437484602 0.384951387436992 0.47040283660002] 1.05944746344542 [0.771330223226528 6.08472761512516 4.65328124210808 0.5 0.5] 1.05361823519652 8.607673323742 5.04517238468758 [0 1 0 11534.3359143377 0.498061062810422] [false] [0.00180114642716944 0.0013486813986674 0.309254288673401] [false] [759.079740992231 456.444788176012 347.985751226562 692.940749356107 776.177812459639 8922.89196469236] [661.852955600728 423.557366877117 230.760560885184 548.053534062952 730.46301010901 8939.66523614306] [182.572998046875 337.689208984375 430.239898681641] [-7.66816997528076 34.0351867675781 4.18803834915161 182.572998046875 337.689208984375 430.239898681641 554.073364257812 1362.89978027344] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0202146414667368 0.0716390460729599 0.0784357339143753 0 0] [0.0813570117988602 0 0.0813570117988602 0;0.191816478788781 0.00959315191225416 0.201409630701035 2045.72045898438;0.191816478788781 0.00959315191225416 0.201409630701035 2045.72045898438] [0.0440733656287193 0.0922185331583023 0.10260671377182] [0.0317777134478092 0.0422818288207054 0.0523034669458866] 0.10260671377182

0.0784357339143753

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00907905027270317 0.0330621898174286 0.0463946312665939 0.0546087734401226 0.0605569109320641 0.0673963353037834] [0.0818820242842939 0 0.0818820242842939 0;0.216402304639805 0.0122594990079365 0.228661803647741 6275.3310546875;0.19681514098695 0.0155341392741993 0.21234928026115 11180.1064453125;0.176535741329646 0.0180447262350084 0.194580467564654 19457.123046875;0.159766657301299 0.0210151267354273 0.180781784036727 36762.875;0.159766657301299 0.0210151267354273 0.180781784036727 36762.875] [0.0103258742019534 0.0375512428581715 0.0553572624921799 0.0786236971616745 0.101487457752228 0.109085150063038] [0.00311546283774078 0.012080330401659 0.0270036142319441 0.0471484214067459 0.0655862763524055 0.0713841244578362] 0.109085150063038

0.0673963353037834

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025991/ses-5/sub-0025991_ses-5_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 48s APP: Rough bias correction: Initialize 6s Estimate background 5s Initial correction 5s Refine background 3s Final correction 4s Final scaling 5s 34s Correct center-of-mass 4s Affine registration 8s SPM preprocessing 1 (estimate 1 - TPM registration): 65s SPM preprocessing 1 (estimate 2): 54s SPM preprocessing 2 (write): Write Segmentation 16s Update Segmentation 17s Update Skull-Stripping 39s Update probability maps 8s 81s Global intensity correction: 16s SANLM denoising after intensity normalization (medium): 22s Fast Optimized Shooting registration 31s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.00) 13s Estimate local tissue thresholds (WM) 17s Estimate local tissue thresholds (GM) 24s Intensity transformation 0s SANLM denoising after LAS (medium) 42s 105s ROI segmentation (partitioning): Atlas -> subject space 7s Major structures 3s Ventricle detection 12s Blood vessel detection 8s WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 23s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 62s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 33s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 4s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 3s 11s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0819 0.0000 0.0819 | 32.0000 2 | 2.50 | 0.0797 0.0010 0.0807 | 29.4886 3 | 2.50 | 0.0790 0.0016 0.0805 | 26.9772 4 | 2.50 | 0.0786 0.0018 0.0804 | 24.6107 5 | 2.50 | 0.0783 0.0020 0.0803 | 22.6548 6 | 2.50 | 0.0781 0.0020 0.0801 | 20.6989 7 | 2.50 | 0.0778 0.0021 0.0799 | 18.9688 8 | 2.50 | 0.0776 0.0022 0.0798 | 17.4455 9 | 2.50 | 0.0773 0.0023 0.0796 | 15.9223 10 | 2.50 | 0.0770 0.0024 0.0794 | 14.6627 11 | 2.50 | 0.0767 0.0025 0.0792 | 13.4764 12 | 2.50 | 0.0764 0.0025 0.0790 | 12.3015 13 | 2.50 | 0.0761 0.0026 0.0788 | 11.3776 14 | 2.50 | 0.0758 0.0027 0.0785 | 10.4537 15 | 2.25 | 0.0749 0.0027 0.0777 | 9.5920 16 | 2.25 | 0.0721 0.0041 0.0762 | 8.8725 29 | 2.00 | 0.0735 0.0019 0.0754 | 3.3283 30 | 2.00 | 0.0677 0.0042 0.0719 | 3.1221 31 | 2.00 | 0.0656 0.0052 0.0708 | 2.9160 43 | 1.75 | 0.0645 0.0030 0.0675 | 1.5785 44 | 1.75 | 0.0603 0.0052 0.0655 | 1.5194 45 | 1.75 | 0.0588 0.0060 0.0649 | 1.4626 57 | 1.50 | 0.0573 0.0044 0.0617 | 1.0900 58 | 1.50 | 0.0543 0.0064 0.0607 | 1.0730 59 | 1.50 | 0.0533 0.0070 0.0603 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 166s Prepare output 10s 176s Jacobian determinant (RMS): 0.010 0.038 0.055 0.079 0.101 | 0.109085 Template Matching: 0.082 0.216 0.197 0.177 0.160 | 0.159767 Write result maps: 32s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 37s CSF distance: 13s PBT2x thickness: 40s 96s Create initial surface 81s Topology correction: 89s Surface refinement: 76s Reduction of surface collisions with optimization: 64s Spherical mapping with areal smoothing 82s Spherical registration 291s rh: Thickness estimation (0.50 mm ): WM distance: 24s CSF distance: 12s PBT2x thickness: 38s 80s Create initial surface 78s Topology correction: 85s Surface refinement: 94s Reduction of surface collisions with optimization: 59s Spherical mapping with areal smoothing 76s Spherical registration 304s Final surface processing results: Average thickness (FS): 2.3988 0.6098 mm Surface intensity / position RMSE: 0.0634 / 0.0651 Euler number / defect number / defect size: 18.0 / 10.0 / 0.38% Display thickness: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/surf/lh.thickness.sub-0025991_ses-5_run-1_T1w Display thickness: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/surf/rh.thickness.sub-0025991_ses-5_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/sub-0025991_ses-5_run-1_T1w.nii Surface ROI estimation: 8s Surface and thickness estimation takes: 1644s ROI estimation in native space: ROI estimation of 'cobra' atlas 8s ROI estimation of 'neuromorphometrics' atlas 29s ROI estimation of 'lpba40' atlas 8s ROI estimation of 'hammers' atlas 21s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 7s ROI estimation of 'aal3' atlas 12s ROI estimation of 'mori' atlas 18s ROI estimation of 'anatomy3' atlas 26s ROI estimation of 'julichbrain' atlas 34s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 55s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 85s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 8s 353s Quality check: 11s Print 'Graphics' figure to: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/report/catreport_sub-0025991_ses-5_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 48 minute(s) and 1 second(s). Image Quality Rating (IQR): 82.73% (B-) GM volume (GMV): 45.85% (618.98 / 1349.95 ml) GM thickness (GMT): 2.40 0.61 mm Segmentations are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/mri Reports are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/report Labels are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-5/label ------------------------------------------------------------------------