[1.08213653118977 0.0961719891595026 0.0232634976270629 1.08175141857754;-0.0750994005431048 1.08604874550879 0.148981059377179 -34.6516571015873;-0.0179232312606879 -0.1037684015549 1.13014618219628 -12.3170733612182;0 0 0 1] [1.08213653118977 0.0961719891595026 0.0232634976270629 1.08175141857754;-0.0750994005431048 1.08604874550879 0.148981059377179 -34.6516571015873;-0.0179232312606879 -0.1037684015549 1.13014618219628 -12.3170733612182;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [344.943484444972 430.59350897853 203.119300078604 236.98132370181 145.954123193896 31.723556101823 71.1407630633855 502.912714736362 909.017679853367 711.879720937304 352.145645216494 255.953523379099 20.9144575950822] [1322.21656242443;215.77205334978;3231.70001205125;2990.61223860342;2684.26964143706;199.53456077172;668.406085202656;15091.0708526585;5074.57826258961;23116.6103910685;4025.77967433317;12284.0634099594;118.898143885102] -5.747887134552 [1.08175141857754 -34.6516571015873 -12.3170733612182] [0.0932343255649032 0.0229478713835242 0.0674355964727159] [1.08488738324131 1.0949950859668 1.1393416805889] [0.0207050798853305 -0.00532717261872511 0.0391107507746856] [1.08175141857754 -34.6516571015873 -12.3170733612182] [0.0932343255649032 0.0229478713835242 0.0674355964727159] [1.08488738324131 1.0949950859668 1.1393416805889] [0.0207050798853305 -0.00532717261872511 0.0391107507746856] /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2 sub-0025991_ses-2_run-1_T1w /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/sub-0025991_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/sub-0025991_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/mri/msub-0025991_ses-2_run-1_T1w.nii /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/mri/p0sub-0025991_ses-2_run-1_T1w.nii ../XHCUMS/sub-0025991/ses-2/sub-0025991_ses-2_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_359023/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 0.380836533226796 10.5 0.0619092620909214 0.0642672926187515 [0.999999971195566 0.999999971195566 1] [0.999999968587772 0.999999968587772 1] 0.999999980797044 0 [10.2489995956421 133.350006103516 331.411987304688 442.591003417969] [0.0231568180024624 0.301293969154358 0.748799622058868 1] T1 [103.428937423087 56.9680272015531 38.4355346607627 21.7695629247571] [0.239229440689087 0.131766110658646 0.0889007598161697 0.0503526441752911] 113.814598083496 0.257155239582062 0.200420260429382 0.138507515192032 0.504679322242737 [1.99999994239113 1.99999994239113 2] 1.99999996159409 1.92051148414612 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.2260046005249 2.31937289237976 1.71150636672974 1.81632653061224 1.0952091333067 1.525 1.23818528652191 1.28534579277039 2.13156577104378 2.19898194331229 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-031800 1639 1639 18 0.380836533226796 10.5 0.0619092620909214 0.0642672926187515 18 0.380836533226796 [219.281903870792 624.118023535221 507.235799505734 0 0] 0.67390191844679 0.000498951645524496 1862.81756316762 1350.63572691175 [0.162354585697347 0.462092043842404 0.375553370460248 0 0] [2.43407504707202 0.602637163791349] [2.43556571006775 0.713623247420666 1] [1.84885331745554 0.234864256429943 0.29950707243892;2.46628431854931 0.172155959294265 0.441357693956279;3.09627905925807 0.262143247563129 0.259135233604801] [0.880179153231493 0.296889551976889 0.526947890818859;4.05375050943137 0.383825428952465 0.473052109181141] 1.05783701271121 [0.765707358070169 6.14892320119261 4.59470852119699 0.5 0.5] 1.04989516455245 8.60646021451915 5.08702182133465 [0 1 0 11534.33533552 0.506382095919975] [false] [0.00184661732055247 0.0013529967982322 0.310631364583969] [false] [770.301841802282 454.287300871411 347.396229155412 683.304600209013 789.363985702753 8918.20582403227] [668.334636443611 422.346181309467 226.73313869679 551.166647726195 744.995882607802 8920.7798317137] [180.567199707031 337.036010742188 431.026000976562] [-7.90376996994019 79.6885833740234 4.4101414680481 180.567199707031 337.036010742188 431.026000976562 556.25537109375 1398.47424316406] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0208316314965487 0.0749770626425743 0.0822872892022133 0 0] [0.0818998742074955 0 0.0818998742074955 0;0.189214278240593 0.00988106080750171 0.199095339048095 2107.11645507812;0.189214278240593 0.00988106080750171 0.199095339048095 2107.11645507812] [0.0451838150620461 0.096178263425827 0.106658063828945] [0.0325518548488617 0.0428491160273552 0.0527891106903553] 0.106658063828945

0.0822872892022133

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00962773524224758 0.0358580052852631 0.0501970648765564 0.0582115724682808 0.0639758631587029 0.0713848322629929] [0.0827133458684915 0 0.0827133458684915 0;0.215263522588523 0.0134461080586081 0.228709630647131 6882.7265625;0.194305673658352 0.0162748259025833 0.210580499560935 11713.1875;0.174009433612298 0.0183358695092704 0.192345303121569 19771.0546875;0.157281399180154 0.0211214785552144 0.178402877735368 36948.921875;0.157281399180154 0.0211214785552144 0.178402877735368 36948.921875] [0.0109200868755579 0.0404323935508728 0.059481855481863 0.0828447118401527 0.105038024485111 0.112570136785507] [0.00322450371459126 0.0125428698956966 0.0275550987571478 0.0475247912108898 0.0654380992054939 0.0712153762578964] 0.112570136785507

0.0713848322629929

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025991/ses-2/sub-0025991_ses-2_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 48s APP: Rough bias correction: Initialize 6s Estimate background 5s Initial correction 5s Refine background 3s Final correction 5s Final scaling 4s 34s Correct center-of-mass 3s Affine registration 8s SPM preprocessing 1 (estimate 1 - TPM registration): 63s SPM preprocessing 1 (estimate 2): 54s SPM preprocessing 2 (write): Write Segmentation 15s Update Segmentation 16s Update Skull-Stripping 36s Update probability maps 8s 75s Global intensity correction: 15s SANLM denoising after intensity normalization (medium): 20s Fast Optimized Shooting registration 28s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.00) 12s Estimate local tissue thresholds (WM) 16s Estimate local tissue thresholds (GM) 22s Intensity transformation 0s SANLM denoising after LAS (medium) 38s 96s ROI segmentation (partitioning): Atlas -> subject space 6s Major structures 3s Ventricle detection 10s Blood vessel detection 7s WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 19s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 53s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 28s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 3s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 9s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0827 0.0000 0.0827 | 32.0000 2 | 2.50 | 0.0800 0.0012 0.0812 | 29.4886 3 | 2.50 | 0.0792 0.0018 0.0810 | 26.9772 4 | 2.50 | 0.0788 0.0020 0.0808 | 24.6107 5 | 2.50 | 0.0785 0.0022 0.0807 | 22.6548 6 | 2.50 | 0.0782 0.0023 0.0805 | 20.6989 7 | 2.50 | 0.0779 0.0024 0.0803 | 18.9688 8 | 2.50 | 0.0776 0.0025 0.0801 | 17.4455 9 | 2.50 | 0.0773 0.0026 0.0798 | 15.9223 10 | 2.50 | 0.0769 0.0027 0.0796 | 14.6627 11 | 2.50 | 0.0766 0.0028 0.0794 | 13.4764 12 | 2.50 | 0.0763 0.0028 0.0791 | 12.3015 13 | 2.50 | 0.0759 0.0029 0.0789 | 11.3776 14 | 2.50 | 0.0756 0.0030 0.0786 | 10.4537 15 | 2.25 | 0.0747 0.0031 0.0778 | 9.5920 16 | 2.25 | 0.0718 0.0045 0.0762 | 8.8725 29 | 2.00 | 0.0728 0.0020 0.0749 | 3.3283 30 | 2.00 | 0.0669 0.0044 0.0713 | 3.1221 31 | 2.00 | 0.0648 0.0054 0.0702 | 2.9160 43 | 1.75 | 0.0637 0.0031 0.0668 | 1.5785 44 | 1.75 | 0.0594 0.0053 0.0648 | 1.5194 45 | 1.75 | 0.0580 0.0061 0.0641 | 1.4626 57 | 1.50 | 0.0565 0.0045 0.0609 | 1.0900 58 | 1.50 | 0.0534 0.0064 0.0598 | 1.0730 59 | 1.50 | 0.0524 0.0070 0.0595 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 137s Prepare output 8s 146s Jacobian determinant (RMS): 0.011 0.040 0.059 0.083 0.105 | 0.112570 Template Matching: 0.083 0.215 0.194 0.174 0.157 | 0.157281 Write result maps: 28s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 30s CSF distance: 11s PBT2x thickness: 35s 80s Create initial surface 70s Topology correction: 76s Surface refinement: 79s Reduction of surface collisions with optimization: 54s Spherical mapping with areal smoothing 65s Spherical registration 243s rh: Thickness estimation (0.50 mm ): WM distance: 22s CSF distance: 12s PBT2x thickness: 34s 73s Create initial surface 68s Topology correction: 74s Surface refinement: 81s Reduction of surface collisions with optimization: 53s Spherical mapping with areal smoothing 62s Spherical registration 258s Final surface processing results: Average thickness (FS): 2.4341 0.6026 mm Surface intensity / position RMSE: 0.0619 / 0.0643 Euler number / defect number / defect size: 18.0 / 10.5 / 0.38% Display thickness: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/surf/lh.thickness.sub-0025991_ses-2_run-1_T1w Display thickness: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/surf/rh.thickness.sub-0025991_ses-2_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/sub-0025991_ses-2_run-1_T1w.nii Surface ROI estimation: 7s Surface and thickness estimation takes: 1415s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 27s ROI estimation of 'lpba40' atlas 8s ROI estimation of 'hammers' atlas 19s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 7s ROI estimation of 'aal3' atlas 11s ROI estimation of 'mori' atlas 16s ROI estimation of 'anatomy3' atlas 23s ROI estimation of 'julichbrain' atlas 30s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s Write results 7s 307s Quality check: 9s Print 'Graphics' figure to: /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/report/catreport_sub-0025991_ses-2_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 41 minute(s) and 52 second(s). Image Quality Rating (IQR): 83.01% (B-) GM volume (GMV): 46.21% (624.12 / 1350.64 ml) GM thickness (GMT): 2.43 0.60 mm Segmentations are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/mri Reports are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/report Labels are saved in /var/lib/condor/execute/dir_359023/ds/XHCUMS/sub-0025991/ses-2/label ------------------------------------------------------------------------