[0.993888545695773 -0.12239924530354 -0.0798553267678528 14.8612479926544;0.181181776920912 0.953786785943262 0.361047785608752 -30.0514689824157;0.041214895462096 -0.334206322768743 1.03946387505917 -10.7805553701935;0 0 0 1] [0.993888545695773 -0.12239924530354 -0.0798553267678528 14.8612479926544;0.181181776920912 0.953786785943262 0.361047785608752 -30.0514689824157;0.041214895462096 -0.334206322768743 1.03946387505917 -10.7805553701935;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [328.82659199863 420.86601622264 103.536506008109 217.907150228992 947.281733046788 483.539275731181 871.888749249398 339.80693243155 741.393799101728 477.771857591148 260.768952896525 127.49506078949 25.132561814053] [1738.20376066522;205.23187608988;2547.45125982393;2821.4162159738;7964.34570629494;1578.43286691584;1730.11494540929;2476.3214597071;11516.1960393649;12993.6347695185;12437.2106337891;4356.75215150485;193.028969306363] -5.80556201934814 [14.8612479926544 -30.0514689824157 -10.7805553701935] [0.325217147903029 -0.0972332114458694 -0.157423637542846] [1.01110827568635 1.01735819728873 1.10289162613426] [0.0365664065980537 0.0282580954079997 0.00549271629800446] [14.8612479926544 -30.0514689824157 -10.7805553701935] [0.325217147903029 -0.0972332114458694 -0.157423637542846] [1.01110827568635 1.01735819728873 1.10289162613426] [0.0365664065980537 0.0282580954079997 0.00549271629800446] /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5 sub-0026006_ses-5_run-1_T1w /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/sub-0026006_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/sub-0026006_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/mri/msub-0026006_ses-5_run-1_T1w.nii /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/mri/p0sub-0026006_ses-5_run-1_T1w.nii ../XHCUMS/sub-0026006/ses-5/sub-0026006_ses-5_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3298923/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 0.557421792008704 13.5 0.0616937726736069 0.0640267878770828 [0.999999999213084 0.999999995294273 0.999999985452867] [1.00000000072844 0.999999996163902 0.999999985836766] 0.999999993320074 0 [7.5 123.347999572754 301.171997070312 417.346984863281] [0.0179706588387489 0.295552641153336 0.72163450717926 1] T1 [10.2829464952621 67.8256960453216 40.4059057621082 21.1304804310608] [0.0250897202640772 0.165490284562111 0.0985877811908722 0.0515569970011711] 118.300933837891 0.283459424972534 0.277550101280212 0.137480407953262 0.596290826797485 [1.99999999842617 1.99999999058855 1.99999997090573] 1.99999998664015 2.31403112411499 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 3.83144211769104 2.30462837219238 1.93871736526489 1.81632653061224 1.13935544800218 1.675 1.23387551307678 1.28053569793701 2.23591302156408 2.18833198242249 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-022935 1639 1639 18 0.557421792008704 13.5 0.0616937726736069 0.0640267878770828 18 0.557421792008704 [415.761373211585 737.131928445542 656.225063176209 0 0] 1.39396076023877 0.000770519379679832 2205.67741194166 1809.11836483334 [0.2298143567018 0.407453676207333 0.362731967090867 0 0] [2.32869849384179 0.60685237034412] [2.30264925956726 0.781384360351303 1] [1.75899172817406 0.251317272788566 0.335218692201967;2.36724011745052 0.17531749467984 0.438142318199558;3.03912671725976 0.281680408878835 0.226638989598475] [0.807678838715873 0.252561256125223 0.47925157465728;4.13167717913977 0.42224912625658 0.520748425342719] 4.10520471945906 [1.97726933731681 5.16763067901101 4.36443906413195 0.5 0.5] 1.07705193796798 8.62391314794223 4.34948658710081 [0 1 0 11534.3357688545 0.478928193097337] [false] [0.00175574515014887 0.00169752142392099 0.0349420495331287] [false] [923.505442873763 581.297586038901 666.10721986828 203.004788650788 1040.75793888792 8664.35041114322] [776.578249332896 542.172641616585 460.055929309324 268.286818895858 840.298534506899 8647.00211732519] [147.300094604492 317.076110839844 420.857788085938] [-6.64305019378662 -6.64305353164673 4.4885082244873 147.300094604492 317.076110839844 420.857788085938 557.636596679688 1251.31604003906] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0183898285031319 0.0633219033479691 0.0690611079335213 0 0] [0.0831685396326499 0 0.0831685396326499 0;0.203969930257259 0.00911882716496022 0.213088757422219 1944.57165527344;0.203969930257259 0.00911882716496022 0.213088757422219 1944.57165527344] [0.0404388196766376 0.0832712203264236 0.0937332957983017] [0.0290159918367863 0.0435609146952629 0.0545100346207619] 0.0937332957983017

0.0690611079335213

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00752383284270763 0.0303731188178062 0.0379933156073093 0.0474207028746605 0.0546645596623421 0.060560617595911] [0.0850926728977972 0 0.0850926728977972 0;0.223892200854701 0.0134740231990232 0.237366224053724 6897.015625;0.212067552715531 0.0164213363296708 0.228488889045201 11818.6328125;0.191553360376603 0.0194730948858451 0.211026455262448 20997.29296875;0.174499282734817 0.0232264800186126 0.197725762753429 40631.3125;0.174499282734817 0.0232264800186126 0.197725762753429 40631.3125] [0.00906964763998985 0.0314285084605217 0.0513947680592537 0.0752588510513306 0.100646808743477 0.107033267617226] [0.00310340360738337 0.0121940998360515 0.0286240857094526 0.0505650192499161 0.0722569674253464 0.0781775414943695] 0.107033267617226

0.060560617595911

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0026006/ses-5/sub-0026006_ses-5_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 57s APP: Rough bias correction: Initialize 6s Estimate background 6s Initial correction 6s Refine background 3s Final correction 5s Final scaling 5s 37s Correct center-of-mass 3s Affine registration 9s SPM preprocessing 1 (estimate 1 - TPM registration): 75s SPM preprocessing 1 (estimate 2): 62s SPM preprocessing 2 (write): Write Segmentation 17s Update Segmentation 22s Update Skull-Stripping 44s Update probability maps 9s 91s Global intensity correction: 17s SANLM denoising after intensity normalization (medium): 33s Fast Optimized Shooting registration 34s Local adaptive segmentation (LASstr=0.50): Prepare maps 4s Prepare partitions 2s Prepare segments (LASmod = 1.13) 17s Estimate local tissue thresholds (WM) 20s Estimate local tissue thresholds (GM) 28s Intensity transformation 0s SANLM denoising after LAS (medium) 53s 128s ROI segmentation (partitioning): Atlas -> subject space 8s Major structures 4s Ventricle detection 22s Blood vessel detection 12s WMH detection (WMHCstr=0.50 > WMHCstr'=0.15) 30s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 4s Final corrections 4s 85s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 38s AMAP peaks: [CSF,GM,WM] = [0.35 0.07,0.68 0.08,0.98 0.04] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 5s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 3s 13s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0851 0.0000 0.0851 | 32.0000 2 | 2.50 | 0.0830 0.0010 0.0841 | 29.4886 3 | 2.50 | 0.0824 0.0015 0.0839 | 26.9772 4 | 2.50 | 0.0821 0.0017 0.0838 | 24.6107 5 | 2.50 | 0.0818 0.0019 0.0837 | 22.6548 6 | 2.50 | 0.0816 0.0019 0.0835 | 20.6989 7 | 2.50 | 0.0814 0.0020 0.0834 | 18.9688 8 | 2.50 | 0.0811 0.0021 0.0832 | 17.4455 9 | 2.50 | 0.0809 0.0021 0.0830 | 15.9223 10 | 2.50 | 0.0806 0.0022 0.0828 | 14.6627 11 | 2.50 | 0.0804 0.0023 0.0826 | 13.4764 12 | 2.50 | 0.0801 0.0023 0.0824 | 12.3015 13 | 2.50 | 0.0799 0.0024 0.0823 | 11.3776 14 | 2.50 | 0.0796 0.0024 0.0820 | 10.4537 15 | 2.25 | 0.0798 0.0025 0.0823 | 9.5920 16 | 2.25 | 0.0772 0.0038 0.0809 | 8.8725 17 | 2.25 | 0.0762 0.0042 0.0804 | 8.1530 18 | 2.25 | 0.0756 0.0044 0.0799 | 7.5234 19 | 2.25 | 0.0751 0.0045 0.0795 | 6.9630 20 | 2.25 | 0.0746 0.0045 0.0791 | 6.4027 29 | 2.00 | 0.0771 0.0025 0.0795 | 3.3283 30 | 2.00 | 0.0723 0.0047 0.0769 | 3.1221 31 | 2.00 | 0.0707 0.0055 0.0762 | 2.9160 43 | 1.75 | 0.0700 0.0030 0.0731 | 1.5785 44 | 1.75 | 0.0653 0.0056 0.0710 | 1.5194 45 | 1.75 | 0.0639 0.0065 0.0703 | 1.4626 57 | 1.50 | 0.0628 0.0046 0.0674 | 1.0900 58 | 1.50 | 0.0592 0.0070 0.0663 | 1.0730 59 | 1.50 | 0.0582 0.0077 0.0659 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 193s Prepare output 11s 203s Jacobian determinant (RMS): 0.009 0.031 0.051 0.075 0.101 | 0.107033 Template Matching: 0.085 0.224 0.212 0.192 0.174 | 0.174499 Write result maps: 39s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 49s CSF distance: 18s PBT2x thickness: 51s 125s Create initial surface 95s Topology correction: 109s Surface refinement: 129s Reduction of surface collisions with optimization: 83s Spherical mapping with areal smoothing 99s Spherical registration 303s rh: Thickness estimation (0.50 mm ): WM distance: 56s CSF distance: 19s PBT2x thickness: 51s 133s Create initial surface 94s Topology correction: 109s Surface refinement: 130s Reduction of surface collisions with optimization: 84s Spherical mapping with areal smoothing 102s Spherical registration 301s Final surface processing results: Average thickness (FS): 2.3286 0.6068 mm Surface intensity / position RMSE: 0.0617 / 0.0640 Euler number / defect number / defect size: 18.0 / 13.5 / 0.56% Display thickness: /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/surf/lh.thickness.sub-0026006_ses-5_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/surf/rh.thickness.sub-0026006_ses-5_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/sub-0026006_ses-5_run-1_T1w.nii Surface ROI estimation: 12s Surface and thickness estimation takes: 2006s ROI estimation in native space: ROI estimation of 'cobra' atlas 11s ROI estimation of 'neuromorphometrics' atlas 42s ROI estimation of 'lpba40' atlas 12s ROI estimation of 'hammers' atlas 30s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 11s ROI estimation of 'aal3' atlas 18s ROI estimation of 'mori' atlas 26s ROI estimation of 'anatomy3' atlas 36s ROI estimation of 'julichbrain' atlas 49s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 31s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 79s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 8s 460s Quality check: 12s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/report/catreport_sub-0026006_ses-5_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 58 minute(s) and 29 second(s). Image Quality Rating (IQR): 83.12% (B-) GM volume (GMV): 40.75% (737.13 / 1809.12 ml) GM thickness (GMT): 2.33 0.61 mm Segmentations are saved in /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/mri Reports are saved in /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/report Labels are saved in /var/lib/condor/execute/dir_3298923/ds/XHCUMS/sub-0026006/ses-5/label ------------------------------------------------------------------------