[1.06644139447366 -0.0162329422420467 -0.00288837913147484 -0.358957221849457;0.0348452952388335 0.999845363161139 0.367312775726929 -28.6377882076439;-9.61062978877413e-06 -0.349833952411719 1.09944015719176 13.3118368220505;0 0 0 1] [1.06644139447366 -0.0162329422420467 -0.00288837913147484 -0.358957221849457;0.0348452952388335 0.999845363161139 0.367312775726929 -28.6377882076439;-9.61062978877413e-06 -0.349833952411719 1.09944015719176 13.3118368220505;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [341.777156789009 432.099949894306 157.214798192899 251.657963710573 187.37218898357 23.1578906233757 74.1486553388321 408.244018647326 599.031135259111 547.462911866273 376.074164496787 205.537737983411 25.8080173345918] [1454.24466684432;258.881638204107;900.753309392896;2032.65991806844;4418.38965575385;122.948925641809;904.510296553172;14479.7262256019;29406.5776098582;29250.6458416655;2421.4413678833;8456.31979028744;237.544686811379] -5.83511352539062 [-0.358957221849457 -28.6377882076439 13.3118368220505] [0.336409933309383 -0.0107768969054455 -0.0308342384154547] [1.06701051660215 1.0592771512819 1.15902586378473] [0.0153988680140161 0.00852715956238488 -0.0155677981652881] [-0.358957221849457 -28.6377882076439 13.3118368220505] [0.336409933309383 -0.0107768969054455 -0.0308342384154547] [1.06701051660215 1.0592771512819 1.15902586378473] [0.0153988680140161 0.00852715956238488 -0.0155677981652881] /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1 sub-0026002_ses-1_run-1_T1w /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/sub-0026002_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/sub-0026002_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/mri/msub-0026002_ses-1_run-1_T1w.nii /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/mri/p0sub-0026002_ses-1_run-1_T1w.nii ../XHCUMS/sub-0026002/ses-1/sub-0026002_ses-1_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_2737911/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 14 0.36556422374572 10.5 0.0604959167540073 0.0612400099635124 [1.00000000967709 0.999999988986687 1.00000000915568] [1.00000001008653 0.999999989402804 1.0000000093159] 1.00000000260649 0 [7.97599983215332 130.531005859375 323.429992675781 438.653991699219] [0.0181828960776329 0.297571688890457 0.737323701381683 1] T1 [9.6333350704359 61.6732587125486 39.9738947896852 22.5624805580025] [0.022367836907506 0.143200397491455 0.0928162038326263 0.052388284355402] 117.35791015625 0.267540961503983 0.235512495040894 0.156550318002701 0.479301542043686 [2.00000001935418 1.99999997797337 2.00000001831135] 2.00000000521297 2.09955358505249 1 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.07021903991699 2.57838535308838 1.6485652923584 1.61224489795918 1.09139105593643 1.525 1.20991837978363 1.22480022907257 2.32786767670953 2.4010687540823 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-044059 1639 1639 14 0.36556422374572 10.5 0.0604959167540073 0.0612400099635124 14 0.36556422374572 [263.83719840158 638.238205619836 521.523298709782 0 0] 0.70363530031332 0.000494265201958518 1893.40125891462 1423.5987027312 [0.185331159613593 0.448327330163596 0.366341510222811 0 0] [2.46150669828488 0.613463853151253] [2.46321845054626 0.730776055665705 1] [1.83424358691398 0.250644070830483 0.277646776707566;2.47766293672043 0.175686478114835 0.4615323128572;3.12769914193505 0.265527775386609 0.260820910435234] [0.865469393546727 0.27310142199106 0.514577402571905;4.09767591839975 0.367061695566254 0.485422597428095] 1.01325657459784 [1.17836134363493 5.9017121078232 4.42926562900163 0.5 0.5] 1.04942652019585 8.6123169459799 4.88442258541899 [0 1 0 11534.3360901922 0.378006175132115] [false] [0.00166582118254155 0.00120353000238538 0.317657887935638] [false] [783.070453953942 467.88470215905 481.241784629603 1933.81813467478 1267.35112096324 7379.6527983129] [652.808715552055 433.872462643878 296.990794771936 460.067647188258 1073.11564866472 8617.59275038972] [169.586502075195 330.936309814453 432.421691894531] [-7.36265993118286 -4.87173461914062 4.67827463150024 169.586502075195 330.936309814453 432.421691894531 563.839294433594 1428.51330566406] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0209329277276993 0.0765474215149879 0.0843613147735596 0 0] [0.0850538701808849 0 0.0850538701808849 0;0.201523633134895 0.0107078414862039 0.212231474621098 2283.42578125;0.201523633134895 0.0107078414862039 0.212231474621098 2283.42578125] [0.0446165837347507 0.0991024598479271 0.11036378890276] [0.0318419337272644 0.0471501760184765 0.0584493614733219] 0.11036378890276

0.0843613147735596

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00926630571484566 0.0334559343755245 0.0470378622412682 0.0546797178685665 0.060693982988596 0.0675278827548027] [0.0837342257813589 0 0.0837342257813589 0;0.222911385836386 0.0123346268315018 0.235246012667888 6313.787109375;0.201743892001245 0.0162236959671021 0.217967587968347 11676.388671875;0.180318066197583 0.0187979912825799 0.199116057480163 20269.34765625;0.163069985731868 0.021602803829473 0.184672789561341 37790.9296875;0.163069985731868 0.021602803829473 0.184672789561341 37790.9296875] [0.0106870178133249 0.0380479134619236 0.0561408847570419 0.079159714281559 0.101203612983227 0.108216129243374] [0.0031878084409982 0.012288236990571 0.0268310569226742 0.0466427616775036 0.0636440068483353 0.0688491240143776] 0.108216129243374

0.0675278827548027

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0026002/ses-1/sub-0026002_ses-1_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 50s APP: Rough bias correction: Initialize 7s Estimate background 6s Initial correction 7s Refine background 4s Final correction 5s Final scaling 5s 40s Correct center-of-mass 3s Affine registration 10s SPM preprocessing 1 (estimate 1 - TPM registration): 68s SPM preprocessing 1 (estimate 2): 62s SPM preprocessing 2 (write): Write Segmentation 17s Update Segmentation 20s Update Skull-Stripping 42s Update probability maps 9s 87s Global intensity correction: 17s SANLM denoising after intensity normalization (medium): 24s Fast Optimized Shooting registration 37s Local adaptive segmentation (LASstr=0.50): Prepare maps 4s Prepare partitions 2s Prepare segments (LASmod = 1.12) 13s Estimate local tissue thresholds (WM) 18s Estimate local tissue thresholds (GM) 25s Intensity transformation 0s SANLM denoising after LAS (medium) 41s 107s ROI segmentation (partitioning): Atlas -> subject space 9s Major structures 3s Ventricle detection 12s Blood vessel detection 9s WMH detection (WMHCstr=0.50 > WMHCstr'=0.11) 22s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 3s Final corrections 5s 64s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 27s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 4s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 2s 11s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0837 0.0000 0.0837 | 32.0000 2 | 2.50 | 0.0816 0.0011 0.0826 | 29.4886 3 | 2.50 | 0.0809 0.0016 0.0825 | 26.9772 4 | 2.50 | 0.0806 0.0018 0.0824 | 24.6107 5 | 2.50 | 0.0803 0.0020 0.0823 | 22.6548 6 | 2.50 | 0.0801 0.0020 0.0821 | 20.6989 7 | 2.50 | 0.0798 0.0021 0.0820 | 18.9688 8 | 2.50 | 0.0796 0.0022 0.0818 | 17.4455 9 | 2.50 | 0.0793 0.0023 0.0816 | 15.9223 10 | 2.50 | 0.0790 0.0024 0.0814 | 14.6627 11 | 2.50 | 0.0788 0.0025 0.0812 | 13.4764 12 | 2.50 | 0.0785 0.0025 0.0810 | 12.3015 13 | 2.50 | 0.0782 0.0026 0.0808 | 11.3776 14 | 2.50 | 0.0779 0.0027 0.0806 | 10.4537 15 | 2.25 | 0.0770 0.0028 0.0798 | 9.5920 16 | 2.25 | 0.0743 0.0041 0.0784 | 8.8725 29 | 2.00 | 0.0758 0.0018 0.0777 | 3.3283 30 | 2.00 | 0.0694 0.0044 0.0738 | 3.1221 31 | 2.00 | 0.0672 0.0054 0.0727 | 2.9160 43 | 1.75 | 0.0660 0.0031 0.0691 | 1.5785 44 | 1.75 | 0.0616 0.0055 0.0670 | 1.5194 45 | 1.75 | 0.0601 0.0063 0.0664 | 1.4626 57 | 1.50 | 0.0585 0.0045 0.0630 | 1.0900 58 | 1.50 | 0.0554 0.0066 0.0619 | 1.0730 59 | 1.50 | 0.0544 0.0072 0.0616 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 189s Prepare output 10s 199s Jacobian determinant (RMS): 0.011 0.038 0.056 0.079 0.101 | 0.108216 Template Matching: 0.084 0.223 0.202 0.180 0.163 | 0.163070 Write result maps: 43s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 57s CSF distance: 16s PBT2x thickness: 47s 125s Create initial surface 75s Topology correction: 86s Surface refinement: 68s Reduction of surface collisions with optimization: 52s Spherical mapping with areal smoothing 75s Spherical registration 233s rh: Thickness estimation (0.50 mm ): WM distance: 34s CSF distance: 16s PBT2x thickness: 47s 104s Create initial surface 76s Topology correction: 86s Surface refinement: 76s Reduction of surface collisions with optimization: 55s Spherical mapping with areal smoothing 77s Spherical registration 241s Final surface processing results: Average thickness (FS): 2.4614 0.6134 mm Surface intensity / position RMSE: 0.0605 / 0.0612 Euler number / defect number / defect size: 14.0 / 10.5 / 0.37% Display thickness: /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/surf/lh.thickness.sub-0026002_ses-1_run-1_T1w Display thickness: /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/surf/rh.thickness.sub-0026002_ses-1_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/sub-0026002_ses-1_run-1_T1w.nii Surface ROI estimation: 8s Surface and thickness estimation takes: 1524s ROI estimation in native space: ROI estimation of 'cobra' atlas 14s ROI estimation of 'neuromorphometrics' atlas 51s ROI estimation of 'lpba40' atlas 15s ROI estimation of 'hammers' atlas 36s ROI estimation of 'thalamus' atlas 3s ROI estimation of 'ibsr' atlas 13s ROI estimation of 'aal3' atlas 21s ROI estimation of 'mori' atlas 31s ROI estimation of 'anatomy3' atlas 45s ROI estimation of 'julichbrain' atlas 60s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 143s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s Write results 11s 588s Quality check: 12s Print 'Graphics' figure to: /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/report/catreport_sub-0026002_ses-1_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 51 minute(s) and 39 second(s). Image Quality Rating (IQR): 80.99% (B-) GM volume (GMV): 44.83% (638.24 / 1423.60 ml) GM thickness (GMT): 2.46 0.61 mm Segmentations are saved in /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/mri Reports are saved in /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/report Labels are saved in /var/lib/condor/execute/dir_2737911/ds/XHCUMS/sub-0026002/ses-1/label ------------------------------------------------------------------------