[1.09446818527756 0.0447120057166548 0.013807771445567 0.61810052308194;-0.0473425277166131 1.05435359456637 0.442727975669959 -25.80638927363;0.0135190341109876 -0.492761174135211 1.1069665433874 21.4246536791909;0 0 0 1] [1.09446818527756 0.0447120057166548 0.013807771445567 0.61810052308194;-0.0473425277166131 1.05435359456637 0.442727975669959 -25.80638927363;0.0135190341109876 -0.492761174135211 1.1069665433874 21.4246536791909;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [296.024249271831 371.336063839113 127.349502282292 195.44799342502 420.851605762819 51.9711978302222 214.958861243531 488.102991502534 760.029692441838 575.293411320616 338.555529774601 428.707185707797 300.493706582718] [1096.05153915027;319.767352332547;346.685261058205;1731.44281827533;16951.0653627587;923.225810813828;7486.94083327122;9202.37717554139;7887.34789474298;35932.3519621582;1353.75808233288;48199.8477864128;18937.1086539768] -6.01474714279175 [0.61810052308194 -25.80638927363 21.4246536791909] [0.436921928011745 0.00711208022934936 0.0443891819009715] [1.09557504891206 1.16465685547894 1.19038596150615] [-0.00636644932358575 0.00759605087871263 -0.0575062007316548] [0.61810052308194 -25.80638927363 21.4246536791909] [0.436921928011745 0.00711208022934936 0.0443891819009715] [1.09557504891206 1.16465685547894 1.19038596150615] [-0.00636644932358575 0.00759605087871263 -0.0575062007316548] /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3 sub-0026000_ses-3_run-1_T1w /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/sub-0026000_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/sub-0026000_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/mri/msub-0026000_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/mri/p0sub-0026000_ses-3_run-1_T1w.nii ../XHCUMS/sub-0026000/ses-3/sub-0026000_ses-3_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_3292157/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 18 1.31194860324733 10.5 0.0757267624139786 0.090568944811821 [1.00000002647485 1.00000002477874 0.999999997622419] [1.0000000299512 1.00000002639047 0.999999998042137] 1.000000016292 0 [0 119.246002197266 288.532989501953 388.266998291016] [0 0.307123720645905 0.743130326271057 1] T1 [5.23915283510133 41.6643622142713 35.5690047434941 21.6210229483356] [0.0134936859831214 0.10730853676796 0.0916096493601799 0.055685967206955] 99.7340087890625 0.25686964392662 0.255032122135162 0.171554207801819 0.421626508235931 [2.00000005294971 2.00000004955748 1.99999999524484] 2.00000003258401 2.199143409729 1 [1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.2302885055542 2.79377269744873 1.50552201271057 1.81632653061224 1.32798715081183 1.525 1.51453518867493 1.81137895584106 2.49565485970966 2.5833510270239 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-021546 1639 1639 18 1.31194860324733 10.5 0.0757267624139786 0.090568944811821 18 1.31194860324733 [380.278263818236 504.154635260987 359.179509729629 0 0] 0.95504711076263 0.000767962030611601 1517.36618020458 1243.61240880885 [0.305785195712603 0.405395307806452 0.288819496480946 0 0] [2.30400868253834 0.696737952632616] [2.28198480606079 0.854700955727915 1] [1.55297732138379 0.342511160195073 0.30921738589147;2.31252132840347 0.214619267862071 0.444529171011065;3.11502023557563 0.319833973592852 0.246253443097465] [0.617488985623143 0.164561768266966 0.50048111618956;4.16067233620682 0.317185397317629 0.49951888381044] 1.56097948156966 [3.34168814139013 5.13066285571932 3.03698808335032 0.5 0.5] 1.07679620306116 7.93120323843785 4.22006568724731 [0 1 0 11534.3365637523 0.515289938911447] [false] [0.00148971402086318 0.00126885762438178 0.249437347054482] [false] [614.218009874104 331.322155273463 559.415493168244 5174.40494022738 920.639595165928 4571.2178917375] [505.213796102902 298.922282923199 396.426837245476 5016.10972377555 919.375520587379 4399.48760004521] [138.310394287109 287.601287841797 372.930511474609] [-7.21887016296387 -7.21886682510376 5.01400566101074 138.310394287109 287.601287841797 372.930511474609 490.240570068359 1266.72351074219] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0237710792571306 0.113110929727554 0.13326895236969 0 0] [0.104056539608031 0 0.104056539608031 0;0.220163736881471 0.0213315650051525 0.241495301886624 4548.91357421875;0.220163736881471 0.0213315650051525 0.241495301886624 4548.91357421875] [0.0531023368239403 0.156951949000359 0.187580555677414] [0.0380433797836304 0.0773962736129761 0.10212791711092] 0.187580555677414

0.13326895236969

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.0112861404195428 0.0426851138472557 0.0741456001996994 0.0877161026000977 0.0982374250888824 0.115627504885197] [0.102473800568508 0 0.102473800568508 0;0.0942645299145299 0.00489596815221815 0.0991604980667481 7518.37109375;0.224408687085945 0.0313103241513619 0.255719011237307 22534.416015625;0.201400249658713 0.0302102395951578 0.231610489253871 32574.85546875;0.18154828170758 0.0329142536912218 0.214462535398802 57578.6484375;0.18154828170758 0.0329142536912218 0.214462535398802 57578.6484375] [0.0136285983026028 0.0535779446363449 0.10309860855341 0.139359995722771 0.176939859986305 0.186113700270653] [0.00434787943959236 0.0188166853040457 0.0455810762941837 0.0727153494954109 0.0983623042702675 0.106929861009121] 0.186113700270653

0.115627504885197

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0026000/ses-3/sub-0026000_ses-3_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 38s APP: Rough bias correction: Initialize 6s Estimate background 6s Initial correction 5s Refine background 3s Final correction 4s Final scaling 4s 35s Correct center-of-mass 3s Affine registration 22s SPM preprocessing 1 (estimate 1 - TPM registration): 5s Use initial fine affine registration. 4s Use previous fine affine registration. 51s SPM preprocessing 1 (estimate 2): 62s SPM preprocessing 2 (write): Write Segmentation 15s Update Segmentation 17s Update Skull-Stripping 39s Update probability maps 9s 80s Global intensity correction: 16s SANLM denoising after intensity normalization (medium): 21s Fast Optimized Shooting registration 34s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.04) 12s Estimate local tissue thresholds (WM) 15s Estimate local tissue thresholds (GM) 21s Intensity transformation 0s SANLM denoising after LAS (medium) 40s 97s ROI segmentation (partitioning): Atlas -> subject space 7s Major structures 3s Ventricle detection 13s Blood vessel detection 8s WMH detection (WMHCstr=0.50 > WMHCstr'=0.44) 17s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 56s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 30s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 4s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 10s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.1025 0.0000 0.1025 | 32.0000 2 | 2.50 | 0.0980 0.0018 0.0998 | 29.4886 3 | 2.50 | 0.0967 0.0027 0.0994 | 26.9772 4 | 2.50 | 0.0960 0.0031 0.0991 | 24.6107 5 | 2.50 | 0.0955 0.0033 0.0988 | 22.6548 6 | 2.50 | 0.0950 0.0035 0.0985 | 20.6989 7 | 2.50 | 0.0945 0.0037 0.0982 | 18.9688 8 | 2.50 | 0.0940 0.0038 0.0979 | 17.4455 9 | 2.50 | 0.0935 0.0040 0.0975 | 15.9223 10 | 2.50 | 0.0929 0.0042 0.0971 | 14.6627 11 | 2.50 | 0.0924 0.0043 0.0967 | 13.4764 12 | 2.50 | 0.0918 0.0044 0.0962 | 12.3015 13 | 2.50 | 0.0912 0.0046 0.0958 | 11.3776 14 | 2.50 | 0.0907 0.0047 0.0954 | 10.4537 15 | 2.25 | 0.0943 0.0049 0.0992 | 9.5920 16 | 2.25 | 0.0894 0.0073 0.0967 | 8.8725 17 | 2.25 | 0.0875 0.0082 0.0956 | 8.1530 18 | 2.25 | 0.0861 0.0086 0.0947 | 7.5234 19 | 2.25 | 0.0851 0.0088 0.0939 | 6.9630 20 | 2.25 | 0.0842 0.0089 0.0930 | 6.4027 21 | 2.25 | 0.0832 0.0090 0.0923 | 5.9447 22 | 2.25 | 0.0824 0.0091 0.0915 | 5.5083 23 | 2.25 | 0.0816 0.0091 0.0907 | 5.0803 24 | 2.25 | 0.0808 0.0092 0.0899 | 4.7404 25 | 2.25 | 0.0801 0.0091 0.0892 | 4.4005 26 | 2.25 | 0.0794 0.0091 0.0885 | 4.0868 27 | 2.25 | 0.0787 0.0091 0.0878 | 3.8221 28 | 2.25 | 0.0781 0.0090 0.0871 | 3.5574 29 | 2.00 | 0.0799 0.0087 0.0886 | 3.3283 30 | 2.00 | 0.0769 0.0099 0.0868 | 3.1221 31 | 2.00 | 0.0757 0.0103 0.0859 | 2.9160 32 | 2.00 | 0.0748 0.0104 0.0852 | 2.7495 43 | 1.75 | 0.0741 0.0060 0.0802 | 1.5785 44 | 1.75 | 0.0688 0.0092 0.0779 | 1.5194 45 | 1.75 | 0.0671 0.0101 0.0772 | 1.4626 57 | 1.50 | 0.0657 0.0075 0.0732 | 1.0900 58 | 1.50 | 0.0617 0.0102 0.0719 | 1.0730 59 | 1.50 | 0.0605 0.0110 0.0715 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 209s Prepare output 10s 219s Jacobian determinant (RMS): 0.014 0.054 0.103 0.139 0.177 | 0.186114 Template Matching: 0.102 0.094 0.224 0.201 0.182 | 0.181548 Write result maps: 34s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 22s CSF distance: 12s PBT2x thickness: 36s 75s Create initial surface 72s Topology correction: 67s Surface refinement: 84s Reduction of surface collisions with optimization: 50s Spherical mapping with areal smoothing 68s Spherical registration 298s rh: Thickness estimation (0.50 mm ): WM distance: 28s CSF distance: 12s PBT2x thickness: 35s 79s Create initial surface 66s Topology correction: 63s Surface refinement: 64s Reduction of surface collisions with optimization: 48s Spherical mapping with areal smoothing 64s Spherical registration 290s Final surface processing results: Average thickness (FS): 2.3040 0.6961 mm Surface intensity / position RMSE: 0.0757 / 0.0906 Euler number / defect number / defect size: 18.0 / 10.5 / 1.31% Display thickness: /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/surf/lh.thickness.sub-0026000_ses-3_run-1_T1w Display thickness: /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/surf/rh.thickness.sub-0026000_ses-3_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/sub-0026000_ses-3_run-1_T1w.nii Surface ROI estimation: 8s Surface and thickness estimation takes: 1470s ROI estimation in native space: ROI estimation of 'cobra' atlas 8s ROI estimation of 'neuromorphometrics' atlas 27s ROI estimation of 'lpba40' atlas 8s ROI estimation of 'hammers' atlas 19s ROI estimation of 'thalamus' atlas 2s ROI estimation of 'ibsr' atlas 7s ROI estimation of 'aal3' atlas 12s ROI estimation of 'mori' atlas 18s ROI estimation of 'anatomy3' atlas 26s ROI estimation of 'julichbrain' atlas 34s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 54s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 81s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s Write results 8s 340s Quality check: 10s Print 'Graphics' figure to: /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/report/catreport_sub-0026000_ses-3_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 45 minute(s) and 26 second(s). Image Quality Rating (IQR): 79.17% (C+) GM volume (GMV): 40.54% (504.15 / 1243.61 ml) GM thickness (GMT): 2.30 0.70 mm Segmentations are saved in /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/mri Reports are saved in /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/report Labels are saved in /var/lib/condor/execute/dir_3292157/ds/XHCUMS/sub-0026000/ses-3/label ------------------------------------------------------------------------