[0.975038614176075 -0.0712220861380101 -0.09695672025988 -0.759686346804538;0.127515248436153 0.999588223473846 0.429604361037929 -25.2865255776181;0.0723454519134629 -0.45357804920478 0.989573890423253 12.2062787456618;0 0 0 1] [0.975038614176075 -0.0712220861380101 -0.09695672025988 -0.759686346804538;0.127515248436153 0.999588223473846 0.429604361037929 -25.2865255776181;0.0723454519134629 -0.45357804920478 0.989573890423253 12.2062787456618;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [333.546766388279 418.426690977589 143.490223577606 226.789330727616 250.577918639145 25.4165300279363 92.9459492414506 380.856312159246 636.505684253962 470.044989179388 377.513706883575 443.965990942511 153.428353697022] [1427.52550281546;248.137412886383;467.360985357657;2633.05914172338;9839.71560578502;157.381743964488;1559.80824418392;5237.99139322786;22045.7094762254;8687.80911585242;1342.34529468104;857.98418839539;10982.0440811595] -5.73385810852051 [-0.759686346804538 -25.2865255776181 12.2062787456618] [0.418135250507523 -0.120325178343219 -0.0885061881093474] [0.985999139011134 1.09969488086068 1.08260210251662] [0.0259250105461433 0.0327462636886648 -0.0110320833779764] [-0.759686346804538 -25.2865255776181 12.2062787456618] [0.418135250507523 -0.120325178343219 -0.0885061881093474] [0.985999139011134 1.09969488086068 1.08260210251662] [0.0259250105461433 0.0327462636886648 -0.0110320833779764] /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3 sub-0025997_ses-3_run-1_T1w /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/sub-0025997_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/sub-0025997_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/mri/msub-0025997_ses-3_run-1_T1w.nii /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/mri/p0sub-0025997_ses-3_run-1_T1w.nii ../XHCUMS/sub-0025997/ses-3/sub-0025997_ses-3_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_912710/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 12 0.165179836001839 15.5 0.0575902089476585 0.0585145503282547 [0.999999996983206 1.00000000500754 1.00000000178441] [0.99999993554981 1.00000000478011 0.999999999076223] 1.00000000125839 0 [0 123.980003356934 313.490997314453 419.384002685547] [0 0.295624077320099 0.747503459453583 1] T1 [7.27361153109778 48.4385868860532 39.5716913978405 21.2772907580508] [0.0173435602337122 0.115499369800091 0.0943567007780075 0.0507346279919147] 105.893013000488 0.252496540546417 0.173864543437958 0.143862545490265 0.554800510406494 [1.99999999396641 2.00000001001508 2.00000000356882] 2.00000000251677 1.78502321243286 1 [1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.29588508605957 2.39624667167664 1.83581471443176 1.51020408163265 1.04129495900046 1.775 1.15180420875549 1.17029094696045 2.16464060675299 2.25622830107753 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-051646 1639 1639 12 0.165179836001839 15.5 0.0575902089476585 0.0585145503282547 12 0.165179836001839 [363.192577992761 672.39090435528 607.15666517082 0 0] 1.82819204608554 0.00111289180388437 2052.14795326643 1642.74014751886 [0.221089487915246 0.409310568911849 0.369599943172905 0 0] [2.36412073770318 0.58714433367326] [2.35840964317322 0.681620460479293 1] [1.79587035942185 0.22838603355171 0.297509178054252;2.39134426486749 0.165362970091923 0.459756781562309;3.00975677065353 0.253564762816538 0.242734040383439] [0.876727666088065 0.281143445465866 0.495012799011387;3.93636914088038 0.35316694883529 0.504987200988613] 2.28216929628162 [1.82057269962726 5.20098004511224 4.48778633572027 0.5 0.5] 1.11128918038844 8.62285235008236 4.39815566241789 [0 1 0 11534.3360435439 0.385345344327208] [false] [0.00175784202292562 0.00150685699190944 0.326571613550186] [false] [825.377518614643 550.218323522894 636.712428085804 3401.80575857735 1020.54782835715 6148.52793724089] [682.454844921938 511.307757253185 394.291968265191 4372.49544877912 953.204263810304 4621.8800650405] [155.368896484375 322.743011474609 418.890289306641] [-8.13967037200928 -8.13966751098633 6.49228858947754 155.368896484375 322.743011474609 418.890289306641 550.651000976562 1324.79113769531] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0189002975821495 0.0766230747103691 0.0847130939364433 0 0] [0.0876784307472989 0 0.0876784307472989 0;0.20654624764945 0.0117063659722922 0.218252613621743 2496.35913085938;0.20654624764945 0.0117063659722922 0.218252613621743 2496.35913085938] [0.0448591820895672 0.10084368288517 0.11333392560482] [0.0325904078781605 0.0511356219649315 0.0631559565663338] 0.11333392560482

0.0847130939364433

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00818066485226154 0.034950990229845 0.0446093752980232 0.0532633401453495 0.0599597692489624 0.0670526623725891] [0.0874129053268423 0 0.0874129053268423 0;0.224537683150183 0.01618067002442 0.240718353174603 8282.48046875;0.208593745657985 0.0180265167047722 0.226620262362758 12973.900390625;0.187632416727876 0.0200346469426314 0.207667063670507 21602.798828125;0.169734431815648 0.023154556105886 0.192888987921534 40505.4921875;0.169734431815648 0.023154556105886 0.192888987921534 40505.4921875] [0.00968642998486757 0.0358214862644672 0.0574740953743458 0.0809128731489182 0.104625828564167 0.112386986613274] [0.00326814665459096 0.0130819398909807 0.029227988794446 0.0495210625231266 0.0681986585259438 0.0745425447821617] 0.112386986613274

0.0670526623725891

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0025997/ses-3/sub-0025997_ses-3_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 43s APP: Rough bias correction: Initialize 5s Estimate background 5s Initial correction 5s Refine background 3s Final correction 4s Final scaling 4s 32s Correct center-of-mass 3s Affine registration 9s SPM preprocessing 1 (estimate 1 - TPM registration): 62s SPM preprocessing 1 (estimate 2): 50s SPM preprocessing 2 (write): Write Segmentation 14s Update Segmentation 17s Update Skull-Stripping 35s Update probability maps 7s 73s Global intensity correction: 14s SANLM denoising after intensity normalization (medium): 22s Fast Optimized Shooting registration 27s Local adaptive segmentation (LASstr=0.50): Prepare maps 3s Prepare partitions 2s Prepare segments (LASmod = 1.03) 12s Estimate local tissue thresholds (WM) 15s Estimate local tissue thresholds (GM) 21s Intensity transformation 0s SANLM denoising after LAS (medium) 37s 94s ROI segmentation (partitioning): Atlas -> subject space 6s Major structures 3s Ventricle detection 12s Blood vessel detection 8s WMH detection (WMHCstr=0.50 > WMHCstr'=0.20) 20s Manual stroke lesion detection 0s Closing of deep structures 1s Side alignment 3s Final corrections 4s 57s Blood vessel correction (BVCstr=0.50): 1s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 29s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 4s Level 1 cleanup (brain masking) 2s Level 2 cleanup (CSF correction) 1s Level 3 cleanup (CSF/WM PVE) 2s 10s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0874 0.0000 0.0874 | 32.0000 2 | 2.50 | 0.0849 0.0012 0.0861 | 29.4886 3 | 2.50 | 0.0841 0.0018 0.0859 | 26.9772 4 | 2.50 | 0.0837 0.0020 0.0857 | 24.6107 5 | 2.50 | 0.0834 0.0022 0.0855 | 22.6548 6 | 2.50 | 0.0831 0.0023 0.0853 | 20.6989 7 | 2.50 | 0.0828 0.0024 0.0852 | 18.9688 8 | 2.50 | 0.0825 0.0025 0.0850 | 17.4455 9 | 2.50 | 0.0822 0.0025 0.0847 | 15.9223 10 | 2.50 | 0.0819 0.0026 0.0845 | 14.6627 11 | 2.50 | 0.0815 0.0027 0.0843 | 13.4764 12 | 2.50 | 0.0812 0.0028 0.0840 | 12.3015 13 | 2.50 | 0.0809 0.0029 0.0838 | 11.3776 14 | 2.50 | 0.0806 0.0030 0.0835 | 10.4537 15 | 2.25 | 0.0805 0.0030 0.0835 | 9.5920 16 | 2.25 | 0.0774 0.0045 0.0819 | 8.8725 17 | 2.25 | 0.0762 0.0051 0.0813 | 8.1530 18 | 2.25 | 0.0755 0.0053 0.0807 | 7.5234 19 | 2.25 | 0.0748 0.0054 0.0802 | 6.9630 29 | 2.00 | 0.0766 0.0028 0.0794 | 3.3283 30 | 2.00 | 0.0713 0.0051 0.0764 | 3.1221 31 | 2.00 | 0.0695 0.0060 0.0755 | 2.9160 43 | 1.75 | 0.0686 0.0034 0.0719 | 1.5785 44 | 1.75 | 0.0640 0.0059 0.0699 | 1.5194 45 | 1.75 | 0.0625 0.0067 0.0692 | 1.4626 57 | 1.50 | 0.0609 0.0048 0.0658 | 1.0900 58 | 1.50 | 0.0576 0.0070 0.0647 | 1.0730 59 | 1.50 | 0.0566 0.0077 0.0643 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 141s Prepare output 9s 149s Jacobian determinant (RMS): 0.010 0.036 0.057 0.081 0.105 | 0.112387 Template Matching: 0.087 0.225 0.209 0.188 0.170 | 0.169734 Write result maps: 28s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 56s CSF distance: 13s PBT2x thickness: 38s 113s Create initial surface 73s Topology correction: 83s Surface refinement: 90s Reduction of surface collisions with optimization: 57s Spherical mapping with areal smoothing 65s Spherical registration 256s rh: Thickness estimation (0.50 mm ): WM distance: 44s CSF distance: 13s PBT2x thickness: 39s 101s Create initial surface 75s Topology correction: 81s Surface refinement: 70s Reduction of surface collisions with optimization: 59s Spherical mapping with areal smoothing 67s Spherical registration 244s Final surface processing results: Average thickness (FS): 2.3640 0.5870 mm Surface intensity / position RMSE: 0.0576 / 0.0585 Euler number / defect number / defect size: 12.0 / 15.5 / 0.17% Display thickness: /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/surf/lh.thickness.sub-0025997_ses-3_run-1_T1w Display thickness: /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/surf/rh.thickness.sub-0025997_ses-3_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/sub-0025997_ses-3_run-1_T1w.nii Surface ROI estimation: 7s Surface and thickness estimation takes: 1516s ROI estimation in native space: ROI estimation of 'cobra' atlas 7s ROI estimation of 'neuromorphometrics' atlas 25s ROI estimation of 'lpba40' atlas 7s ROI estimation of 'hammers' atlas 18s ROI estimation of 'thalamus' atlas 1s ROI estimation of 'ibsr' atlas 6s ROI estimation of 'aal3' atlas 10s ROI estimation of 'mori' atlas 15s ROI estimation of 'anatomy3' atlas 21s ROI estimation of 'julichbrain' atlas 28s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s Write results 7s 291s Quality check: 10s Print 'Graphics' figure to: /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/report/catreport_sub-0025997_ses-3_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 43 minute(s) and 18 second(s). Image Quality Rating (IQR): 82.44% (B-) GM volume (GMV): 40.93% (672.39 / 1642.74 ml) GM thickness (GMT): 2.36 0.59 mm Segmentations are saved in /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/mri Reports are saved in /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/report Labels are saved in /var/lib/condor/execute/dir_912710/ds/XHCUMS/sub-0025997/ses-3/label ------------------------------------------------------------------------